RetrogeneDB ID: | retro_tbel_441 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_209:354827..355575(-) | ||
Located in intron of: | ENSTBEG00000003995 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000001510 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.98 % |
Parental protein coverage: | 94.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MVKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLNYMVY-MFQYDSTHGKFNGTVKAENGKLVING |
MVKVG.N.FG.IG.LVTRAAFNSGKVDV.AINDPF.DLN.MV...FQYDSTHGKFNGTVKAEN.KL.ING | |
Retrocopy | MVKVGINKFGHIGHLVTRAAFNSGKVDVMAINDPFVDLNSMVT<IFQYDSTHGKFNGTVKAENRKLAING |
Parental | KSITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKY |
KSITIFQERDPANIKWGDAGAEYVVEST.VFTTMEKAGAHLKG.AKRVIIS.PS.A..PMFVMG.NHEKY | |
Retrocopy | KSITIFQERDPANIKWGDAGAEYVVESTSVFTTMEKAGAHLKGEAKRVIISTPSAAPHPMFVMGMNHEKY |
Parental | DNSLKIVSNASCTTNCLA-PLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPA |
.NSLK.VSNASCTTNCLA.PLAKVIHDNFGIVEGLMTTV.AITATQKTV.GP..K.W..G.GAA.NIIPA | |
Retrocopy | -NSLKTVSNASCTTNCLA<PLAKVIHDNFGIVEGLMTTVQAITATQKTVGGP*EKPWHGGCGAA*NIIPA |
Parental | STGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKA |
ST.AAKAVGKVI.ELN.KLT.M.F.VPTPNVSV.DLTCRLEKA | |
Retrocopy | STRAAKAVGKVILELNRKLTSMTFHVPTPNVSVMDLTCRLEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002325 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001510 | 27 retrocopies |
retro_tbel_1055, retro_tbel_1149, retro_tbel_1315, retro_tbel_1359, retro_tbel_1519, retro_tbel_1684, retro_tbel_232, retro_tbel_2380, retro_tbel_2442, retro_tbel_2731, retro_tbel_2992, retro_tbel_3109, retro_tbel_3205, retro_tbel_3418, retro_tbel_3463, retro_tbel_3826, retro_tbel_3829, retro_tbel_393, retro_tbel_4036, retro_tbel_4094, retro_tbel_4310, retro_tbel_4377, retro_tbel_441 , retro_tbel_4560, retro_tbel_4635, retro_tbel_4706, retro_tbel_480,
|
Tupaia belangeri | ENSTBEG00000008617 | 16 retrocopies |