RetrogeneDB ID: | retro_tbel_2832 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_120495:15031..15475(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 66.89 % |
Parental protein coverage: | 57.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SYTATQKTVDGPSKKAWRDGRGAHQNIIPASTGAASAVGKVIPELKGKLTGMAFRVPTPDVSVVDLTCRL |
S.TATQKTVDGPS.K.W.DG.GA.Q.IIPAST.AA.AVGKVIPEL..K.TG.AF..PTP..SVV.L.C.L | |
Retrocopy | SITATQKTVDGPSGKLWHDGYGAAQKIIPASTRAAKAVGKVIPELTRKITGIAFHFPTPNMSVVNLICHL |
Parental | AQPTPYSAIKEAVKAAAKGPLAGILAYTEDQVVSTDFVGDTHSSIFDAKAGIALNDNFVKVISWYDNEYG |
.....Y..IK..VK.A..GPL.GIL.YT.DQ.VS.DF...THSS.FDA.AGIALN..FVK.ISWYDNE.G | |
Retrocopy | EKAAKYDDIKKVVKQASQGPLKGILGYTKDQIVSCDFNSNTHSSTFDAVAGIALNNHFVKLISWYDNEFG |
Parental | YSHRVVDL |
YS.RV..L | |
Retrocopy | YSNRVMNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |