RetrogeneDB ID: | retro_tbel_1193 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4060:243672..244134(-) | ||
Located in intron of: | ENSTBEG00000008719 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 59.12 % |
Parental protein coverage: | 60.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | HSYTATQKTVDGPSK-KAWRDGRGAHQNIIPASTGAASAVGKVIPELKGKLTGMAFRVPTPDVSVVDLTC |
H.....Q.T.DGPSK.K.W.DG.GA.QNIIPASTG.A.A.GKVI.EL.GKLTGMA..VPT..VS.VDLTC | |
Retrocopy | HNPRHHQMTMDGPSK<KLWYDG*GASQNIIPASTGTAKAMGKVILELNGKLTGMASHVPTSNVSIVDLTC |
Parental | RLAQPTPYSAIKEAVKAAAKGP-LAGILAYTEDQVVSTDFVGDTHSSIFDAKAGIALNDNFVKVISWYDN |
.L.....Y...K...K....GP.L.GIL.YTEDQV....F..DTH.S.FD..AGIA..D..VK.ISWYDN | |
Retrocopy | CLEKAAKYNDNK---KQVSQGP>LKGILGYTEDQVIFCNFNSDTH*STFDVRAGIAFDDHLVKLISWYDN |
Parental | EYGYSHRVVDLIRYMFSRD |
E.GYS.RVVD....M.S.. | |
Retrocopy | EFGYSSRVVDFMVHMASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |