RetrogeneDB ID: | retro_tbel_2010 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_653:290393..291002(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 71.08 % |
Parental protein coverage: | 79.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGVNENDYNPGFMNIVSNASCTTNCLAPLVKVIHERFGIVEGLMTTVHSYTATQKTVDGPSKKAWRDGRG |
MGVN...Y......IVSNASCTTNCLAPL.KVI...FGIVEGLMTTVH..TATQKTVDGPS.K.WRDG.G | |
Retrocopy | MGVNHEKYDNS-LKIVSNASCTTNCLAPLAKVIYDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGHG |
Parental | AHQNIIPASTGAASAVGKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPTPYSAIKEAVKAAAKGPLA |
A.QNIIPASTGAA.AVGKVIPEL.GKLTG.AFRVPT....VVDLTCRL.....Y..IK..VK.A..GP.. | |
Retrocopy | AAQNIIPASTGAAKAVGKVIPELNGKLTGKAFRVPTHNMLVVDLTCRLEKAAKYDDIKKVVKQASQGPPK |
Parental | GILAYTEDQVVSTDFVGDTHSSIFDAKAGIALNDNFVKVISWYDNEYGYSHRVVDLIRYMFSRD |
GIL.YTEDQVV..DF...THSS.F.A.AGIALND.FVK.ISWYDNE.GYS.RVVDL...M.S.. | |
Retrocopy | GILGYTEDQVVFCDFNSNTHSSTFNAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |