RetrogeneDB ID: | retro_tbel_4036 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_5642:13091..13760(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000001510 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.88 % |
Parental protein coverage: | 84.15 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MVKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGK |
.VKVGVNGFGRIG.LVTRAAF.SGKVD...INDPFIDLNYM.YMFQYD.THGKFNGT.KAEN.KLVI.GK | |
Retrocopy | LVKVGVNGFGRIGCLVTRAAFSSGKVDIITINDPFIDLNYMIYMFQYDPTHGKFNGTIKAENRKLVISGK |
Parental | SITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDN |
SITI.QE.....IKW.DAG.EYVVEST.VFTTMEKA.AHLKGGAKRV.ISAPSADA.MFVMGVNHEKY.N | |
Retrocopy | SITILQE*E--IIKWDDAGVEYVVESTSVFTTMEKARAHLKGGAKRVFISAPSADALMFVMGVNHEKY-N |
Parental | SLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ---NIIPA |
SLK.VSNASCTTNCLAPLAKVIHDNFGIV.GL.TTVHAITATQKT.DGPSGKLW..G.GAA....N.IP. | |
Retrocopy | SLKVVSNASCTTNCLAPLAKVIHDNFGIV*GLITTVHAITATQKTMDGPSGKLWHGGHGAAKAVGNVIPE |
Parental | STGAAKAVGKVIPELN |
..G.........P..N | |
Retrocopy | LNGKLTGMAFHVPTYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002325 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001510 | 27 retrocopies |
retro_tbel_1055, retro_tbel_1149, retro_tbel_1315, retro_tbel_1359, retro_tbel_1519, retro_tbel_1684, retro_tbel_232, retro_tbel_2380, retro_tbel_2442, retro_tbel_2731, retro_tbel_2992, retro_tbel_3109, retro_tbel_3205, retro_tbel_3418, retro_tbel_3463, retro_tbel_3826, retro_tbel_3829, retro_tbel_393, retro_tbel_4036 , retro_tbel_4094, retro_tbel_4310, retro_tbel_4377, retro_tbel_441, retro_tbel_4560, retro_tbel_4635, retro_tbel_4706, retro_tbel_480,
|
Tupaia belangeri | ENSTBEG00000008617 | 16 retrocopies |