RetrogeneDB ID: | retro_tbel_232 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1513:526065..526804(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000001510 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.8 % |
Parental protein coverage: | 93.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGK |
MVKVGVN.FG.IG.LVTRAAF.SGKVD.VAIND.FIDLNYMVYMFQYDS.HGKFNGTVKAENGKLVINGK | |
Retrocopy | MVKVGVNEFGNIGCLVTRAAFISGKVDIVAINDSFIDLNYMVYMFQYDSNHGKFNGTVKAENGKLVINGK |
Parental | SITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDN |
SITIFQERDPA.IKWGDAGAEYVVEST..FTTMEKAGAHLKGGAKR.IISAPSADAPMFV..VNH.KYDN | |
Retrocopy | SITIFQERDPASIKWGDAGAEYVVESTDIFTTMEKAGAHLKGGAKRLIISAPSADAPMFVIDVNHKKYDN |
Parental | SLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVD-GPSGKLWRDGRGAAQNIIPAST |
SLKIVSNASCTTN.LAPLAKVIH.NF.I.EGLMTTVHAITATQKT...GPSGKLW.DG.GAAQNII.AST | |
Retrocopy | SLKIVSNASCTTNSLAPLAKVIH-NFDIMEGLMTTVHAITATQKTAN>GPSGKLWCDGHGAAQNIILAST |
Parental | GAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEK |
GAAK.V.KVI.ELN.K.T.M....PT.NV.VVDLT..LEK | |
Retrocopy | GAAKDVDKVILELNKKFTSMP--RPTSNVWVVDLTYCLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002325 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001510 | 27 retrocopies |
retro_tbel_1055, retro_tbel_1149, retro_tbel_1315, retro_tbel_1359, retro_tbel_1519, retro_tbel_1684, retro_tbel_232 , retro_tbel_2380, retro_tbel_2442, retro_tbel_2731, retro_tbel_2992, retro_tbel_3109, retro_tbel_3205, retro_tbel_3418, retro_tbel_3463, retro_tbel_3826, retro_tbel_3829, retro_tbel_393, retro_tbel_4036, retro_tbel_4094, retro_tbel_4310, retro_tbel_4377, retro_tbel_441, retro_tbel_4560, retro_tbel_4635, retro_tbel_4706, retro_tbel_480,
|
Tupaia belangeri | ENSTBEG00000008617 | 16 retrocopies |