RetrogeneDB ID: | retro_tbel_1650 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5377:596414..596836(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 69.72 % |
Parental protein coverage: | 54.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | WRDGRGAHQNIIPASTGAASAVGKVIPELKGKLTGMAFRV-PTP-DVSVVDLTCRLAQPTPYSAIKEAVK |
WRD..GA.QNIIP.STGAA..VGKV.PEL.GKLTGMAF.V.P.P..VSVVDLTCRL.....Y..IK..VK | |
Retrocopy | WRDDHGAAQNIIPVSTGAARVVGKVTPELNGKLTGMAFCV<PHPHNVSVVDLTCRLEKAAKYDDIKKVVK |
Parental | AAAKGPLAGILAYTEDQVVSTDFVGDTHSSIFDAKAGIALNDNFVKVISWYDNEYGYSHRVVDLIRYMFS |
.A..GPL.GIL.YTEDQ..S.DF..DTHSSIFDA.AGIALND.FVKVISWYDNE.GY..RVVDL...M.S | |
Retrocopy | QASQGPLKGILGYTEDQLISCDFNSDTHSSIFDAGAGIALNDHFVKVISWYDNEFGYCNRVVDLMVHMAS |
Parental | RD |
.. | |
Retrocopy | KE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |