Parental gene:

GAPDHS, ENSTBEG00000008617

Aliases:None
Description:glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_2040:180497..184383(+)


>ENSTBEG00000008617
AAGCAGCCCAAAGAAATCCCCTGGAAATCTGTCGGGAGCCCCTATGTGGTAGAGTCCACAGGAGTGTACCTCTCCCTAGA
GGCAGCTTCGGAACACATCTCGGCAGGAGCCCAGCGTGTGGTCATCTGTGCACCCTCACCGGATGCACCCATGTTCGTCA
TGGGCGTGAATGAAAATGACTACAACCCTGGCTTCATGAACATTGTCAGCAATGCATCCTGTACCACCAACTGCCTGGCC
CCCCTCGTCAAGGTCATCCATGAGCGGTTCGGGATCGTGGAAGGGCTGATGACCACAGTTCATTCTTACACGGCCACCCA
GAAGACAGTGGACGGGCCATCAAAGAAGGCCTGGCGAGATGGCCGAGGTGCCCATCAGAACATCATCCCAGCCTCCACGG
GGGCTGCCAGCGCTGTGGGCAAAGTCATTCCGGAGCTCAAAGGGAAGCTGACAGGAATGGCATTCCGCGTGCCAACCCCG
GATGTGTCTGTTGTGGACCTGACCTGCCGCCTGGCCCAGCCTACCCCTTACTCGGCCATCAAGGAGGCCGTAAAAGCAGC
AGCCAAGGGGCCTCTGGCTGGCATCCTTGCCTACACTGAGGATCAGGTCGTCTCTACTGACTTTGTTGGCGATACCCACT
CGTCCATTTTCGATGCAAAGGCTGGCATTGCACTCAACGACAACTTCGTAAAGGTCATCTCATGGTATGACAACGAATAT
GGCTACAGTCACCGCGTGGTCGACCTCATCCGCTATATGTTCAGCCGTGACAAGTAA

Species Parental gene accession Homology type Retrogenes number
Mus musculus ENSMUSG00000061099 ortholog_one2one 2 retrogenes
retro_mmus_3024, retro_mmus_528,
Otolemur garnettii ENSOGAG00000009491 ortholog_one2one 25 retrogenes
retro_ogar_1269, retro_ogar_1332, retro_ogar_1460, retro_ogar_1472, retro_ogar_1798, retro_ogar_1968, retro_ogar_2074, retro_ogar_2266, retro_ogar_2376, retro_ogar_2446, retro_ogar_2469, retro_ogar_2631, retro_ogar_2647, retro_ogar_2884, retro_ogar_2957, retro_ogar_315, retro_ogar_3197, retro_ogar_3262, retro_ogar_3517, retro_ogar_355, retro_ogar_468, retro_ogar_582, retro_ogar_632, retro_ogar_658, retro_ogar_785,
Petromyzon marinus ENSPMAG00000009321 ortholog_one2many 1 retrogene
retro_pmar_9,
Pan troglodytes ENSPTRG00000010848 ortholog_one2one 1 retrogene
retro_ptro_2211,
Tupaia belangeri ENSTBEG00000001510 other_paralog 27 retrogenes
retro_tbel_1055, retro_tbel_1149, retro_tbel_1315, retro_tbel_1359, retro_tbel_1519, retro_tbel_1684, retro_tbel_232, retro_tbel_2380, retro_tbel_2442, retro_tbel_2731, retro_tbel_2992, retro_tbel_3109, retro_tbel_3205, retro_tbel_3418, retro_tbel_3463, retro_tbel_3826, retro_tbel_3829, retro_tbel_393, retro_tbel_4036, retro_tbel_4094, retro_tbel_4310, retro_tbel_4377, retro_tbel_441, retro_tbel_4560, retro_tbel_4635, retro_tbel_4706, retro_tbel_480,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_124 63.43 67.83
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2. retro_tbel_249 59.51 63.18
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3. retro_tbel_425 75.00 80.23
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4. retro_tbel_1017 60.49 61.63
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5. retro_tbel_1193 59.12 60.85
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6. retro_tbel_1650 69.72 54.26
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7. retro_tbel_1685 62.57 65.89
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8. retro_tbel_2010 71.08 79.07
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9. retro_tbel_2486 56.25 55.81
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10. retro_tbel_2793 54.29 53.88
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11. retro_tbel_2832 66.89 57.36
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12. retro_tbel_2873 60.38 61.24
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13. retro_tbel_2929 65.90 84.11
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14. retro_tbel_3117 52.99 50.78
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15. retro_tbel_4292 59.51 63.18
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16. retro_tbel_4346 56.86 98.06
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Download FASTA sequences of all ENSTBEG00000008617 retrocopies