RetrogeneDB ID: | retro_tbel_1017 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3595:269107..269574(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 60.49 % |
Parental protein coverage: | 61.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | IVSN-ASCTTNCLAPLVKVIHERFGIVEGLMTTVHSYTATQKTVDGPSKKAWRDGRGAHQNIIPASTGAA |
IVSN..SCT...LAP.....H..FGIVEGLM.TVH..T.TQK.VD.PS.K...DG.G..QNIIPA.T.AA | |
Retrocopy | IVSN>TSCT-QLLAPWPRSFHDNFGIVEGLMVTVHTTTTTQKIVDSPSGKLCPDGCGTTQNIIPALTSAA |
Parental | SAVGK-VIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPTPYSAIKEAVKAAAKG-PLAGILAYTEDQVV |
.AVGK.VIPEL..KLTGMAF.VPT..V.V.DLTC.L.....Y...K........G.PL.GIL.YTEDQV. | |
Retrocopy | KAVGK<VIPELNRKLTGMAFHVPTLNVLVMDLTCHLNNAAKYDDFKKVMRQTSQG<PLKGILGYTEDQVI |
Parental | STDFVGDTHSSIFDAKAGIALN |
S.DF..DTHSSIFD..AGIA.. | |
Retrocopy | SCDFNSDTHSSIFD--AGIAMH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |