RetrogeneDB ID: | retro_vpac_181 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_247:902874..903318(+) | ||
Located in intron of: | ENSVPAG00000007908 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 77.33 % |
Parental protein coverage: | 89.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKE |
TGGEV.ATSALAP.IGPL.LSPK.VGD.I.KA..DW.GLRI.VKLTIQNRQ..IEVVPSASALIIKALKE | |
Retrocopy | TGGEVCATSALAPRIGPLSLSPKMVGDNITKAISDWRGLRIAVKLTIQNRQTPIEVVPSASALIIKALKE |
Parental | P-PRDRKKQKNIKHSGNIT-FDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIEDI |
P..RDRKKQKNIKHSGNIT.FDEIVN.A.Q....SLARELS..IKEILG.AQSV...VDG.H.H.II.DI | |
Retrocopy | P<TRDRKKQKNIKHSGNIT>FDEIVNLAQQIQQQSLARELS*NIKEILGIAQSVHSHVDGHHFHNIIDDI |
Parental | NSGAVECPAS |
.S..VECPAS | |
Retrocopy | ESDEVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |