RetrogeneDB ID: | retro_vpac_306 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_612:115929..116222(+) | ||
Located in intron of: | ENSVPAG00000010029 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 69. % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RQAQIEVVPSASALIIKALKEPPRDRK-KQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGT |
.QAQ..V.PSASALIIK.L.EP.RDRK..QKN.KHSGNITF....N.ARQMR..SLA.E.SGTIKE.L.T | |
Retrocopy | QQAQTAVAPSASALIIKDLEEPLRDRK<EQKNMKHSGNITFVKSINSARQMRPQSLAEEPSGTIKETLET |
Parental | AQSVGCNVDGRHPHDIIEDINSGAVECPAS |
AQSVGCN....HPHDI.EDI.S..V..PAS | |
Retrocopy | AQSVGCNAE-HHPHDIPEDIHSSVVGWPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |