RetrogeneDB ID: | retro_vpac_377 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_1387:182838..183142(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 83.65 % |
Parental protein coverage: | 62.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSG-NITFDEIVNIARQMRHRSLARELSGTIKE |
TIQNRQ..IEVV.SASALIIK.LKEP.RDRKKQKNIKHSG.NITFDEIVNIA.QM.H..LARELSGTIKE | |
Retrocopy | TIQNRQ--IEVVTSASALIIKSLKEPSRDRKKQKNIKHSG>NITFDEIVNIA*QMCH*PLARELSGTIKE |
Parental | ILGTAQSVGCNVDGRHPHDIIEDINSGAVECPAS |
ILGTAQSVG...DG..PHDIIEDINS.AVECP.S | |
Retrocopy | ILGTAQSVGYYADGHYPHDIIEDINSDAVECPES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |