RetrogeneDB ID: | retro_vpac_90 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1697:128094..128580(+) | ||
Located in intron of: | ENSVPAG00000008968 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 80.49 % |
Parental protein coverage: | 99.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQ |
M.PKFDPNEIKV.YLRCTG.EV.ATSALAP.IGPLGLS.KK.G.DI.KAT.DWK.LRITVKLTIQNRQAQ | |
Retrocopy | MLPKFDPNEIKVIYLRCTGREVSATSALAPEIGPLGLSTKKLGADITKATADWKDLRITVKLTIQNRQAQ |
Parental | IEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVG |
.EV.PSASALIIKALKEPPRDR.K.K.IKHS.NITFDE.VN.ARQM..RSLARELSGTI.EI.GT.QSVG | |
Retrocopy | TEVAPSASALIIKALKEPPRDRSK-KSIKHSENITFDETVNTARQMWPRSLARELSGTIEEIPGTVQSVG |
Parental | CNVDGRHPHDIIEDINSGAVECPA |
.NVDG..PH.I..DIN..AVECPA | |
Retrocopy | RNVDGYYPHNITDDINI-AVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |