RetrogeneDB ID: | retro_vpac_506 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_265688:350..846(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 84.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MPPKFDPNEIKVVY-LRCTGGEVGATSALAPKIGPLGLSPKK-VGDDIAKATGDWKGLRITVKLTIQNRQ |
M..KFDP.EIKVVY.L..T.GEVGATSALAPKIG.LGLSPKK.VGDDI.KATGDWK.LRITVKLTIQNRQ | |
Retrocopy | MLAKFDPSEIKVVY>LKWTSGEVGATSALAPKIGLLGLSPKK>VGDDITKATGDWKCLRITVKLTIQNRQ |
Parental | -AQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITF-DEIVNIARQMRHRSLARELSGTIKEILGTA |
.AQ.EVVPSASALIIKALKEPPRDRKKQK.IKHSGNI.F.DEIVNIA.QM.H.SLARELSGTIKEILGT. | |
Retrocopy | >AQTEVVPSASALIIKALKEPPRDRKKQKSIKHSGNIAF>DEIVNIA*QMQH*SLARELSGTIKEILGTF |
Parental | QSVGCNVDGRHPHDIIEDINSGAVECPAS |
QSVGCNVDGR...D.IEDINSGAV.CP.S | |
Retrocopy | QSVGCNVDGR-LYDVIEDINSGAVGCPVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |