RetrogeneDB ID: | retro_vpac_482 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_238946:24..280(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 53.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGN-ITFDEIVNIARQMR |
A..DWKGLRIT.KLTI.NR..Q.E.VPSASALIIKAL.E.PR....QKNIK..GN.I.FDEIVNIA.QM. | |
Retrocopy | AASDWKGLRITLKLTIENR*GQTEEVPSASALIIKALEE*PR----QKNIKCNGN>IIFDEIVNIAHQMW |
Parental | HRSLARELSGTIKEILGTAQ |
H..LA.ELSGTIKEI.GTAQ | |
Retrocopy | HLPLAQELSGTIKEIPGTAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |