RetrogeneDB ID: | retro_vpac_191 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2659:49471..49755(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 61.46 % |
Parental protein coverage: | 57.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PKFD-PNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQI |
PKF..P.EIKV.YL..TGG..GA.SALA.KI..L........D.I.KATG.WK.L..TVKLTIQN...QI | |
Retrocopy | PKFN<PSEIKVIYLSGTGG*LGAMSALASKISHLSIYXXXXDDNIIKATGEWKDLTSTVKLTIQNTKVQI |
Parental | EVVPSASALIIKALKEPPRDRKKQKN |
E.VPS.S..IIKALKE..R.RKKQ.N | |
Retrocopy | EMVPSSSS*IIKALKELLRNRKKQTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |