RetrogeneDB ID: | retro_vpac_43 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1191:130415..130900(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSVPAG00000005123 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 61.96 % |
Parental protein coverage: | 98.18 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEV |
KF.PN.IKVV.LRC..GE....SA.A.KI.PL.LSPKK.G.DI..AT..WKGLRI.V...I..RQAQI.V | |
Retrocopy | KFSPNKIKVVCLRCLRGEFSTMSAVATKICPLSLSPKKFGGDITMATSGWKGLRIIVDRHI*YRQAQIQV |
Parental | VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSV-GCN |
.PS.SAL.IKAL.E..RDRK.Q..I...GN....EIVN.A.QM...SLAR.LSGTI..ILGTAQ.V.GC. | |
Retrocopy | IPSTSALAIKAL*ELCRDRKNQESILPRGNTPIEEIVNFA*QMWL*SLARKLSGTIQGILGTAQCV<GCS |
Parental | VDGRHPHDIIEDINSGAVECPAS |
VDG...HD.I..I..GAV.CPAS | |
Retrocopy | VDGCCRHDFIGNISGGAVKCPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |