Parental gene:

RPS16, ENSAMEG00000008470

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193591.1:139984..142540(+)


>ENSAMEG00000008470
CCTTTTCCGGTTGCGGCGCCGCGCGGTGAGGGCCTCTTACCTACGTTCGCAGTCATGCCGTCCAAGGGCCCTCTGCAGTC
CGTGCAGGTCTTCGGACGCAAGAAGACGGCCACAGCCGTGGCGCACTGCAAACGGGGCAACGGCCTCATCAAGGTGAATG
GGCGGCCCCTGGAGATGATCGAGCCGCGCACGCTGCAATACAAGCTACTGGAACCTGTTCTGCTTCTGGGCAAGGAGCGA
TTTGCTGGGGTGGACATCCGAGTCCGAGTGAAGGGTGGTGGTCACGTGGCCCAGATTTACGCAATCCGCCAGTCCATCTC
CAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGAGATCAAAGACATCCTCATCCAGTATG
ACCGACTGCTGGTAGCTGATCCCCGGCGCTGCGAATCCAAAAAGTTTGGCGGTCCTGGTGCCCGTGCTCGCTACCAGAAA
TCCTACCGATAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014176 ortholog_one2one 1 retrogene
retro_acar_194,
Bos taurus ENSBTAG00000021093 possible_ortholog 3 retrogenes
retro_btau_1509, retro_btau_167, retro_btau_441,
Callithrix jacchus ENSCJAG00000014170 ortholog_one2one 6 retrogenes
retro_cjac_2641, retro_cjac_2737, retro_cjac_3019, retro_cjac_885, retro_cjac_905, retro_cjac_949,
Cavia porcellus ENSCPOG00000011359 ortholog_one2one 3 retrogenes
retro_cpor_1266, retro_cpor_1408, retro_cpor_1515,
Felis catus ENSFCAG00000010743 possible_ortholog 4 retrogenes
retro_fcat_1258, retro_fcat_1709, retro_fcat_1806, retro_fcat_1976,
Homo sapiens ENSG00000105193 ortholog_one2one 11 retrogenes
retro_hsap_118, retro_hsap_1658, retro_hsap_1736, retro_hsap_1977, retro_hsap_2064, retro_hsap_2230, retro_hsap_2327, retro_hsap_3593, retro_hsap_4209, retro_hsap_787, retro_hsap_813,
Gorilla gorilla ENSGGOG00000014414 possible_ortholog 10 retrogenes
retro_ggor_110, retro_ggor_1250, retro_ggor_1344, retro_ggor_1664, retro_ggor_1766, retro_ggor_193, retro_ggor_2423, retro_ggor_2819, retro_ggor_652, retro_ggor_667,
Loxodonta africana ENSLAFG00000001541 ortholog_one2one 1 retrogene
retro_lafr_1191,
Myotis lucifugus ENSMLUG00000029089 ortholog_one2one 5 retrogenes
retro_mluc_1906, retro_mluc_2096, retro_mluc_2174, retro_mluc_2529, retro_mluc_481,
Macaca mulatta ENSMMUG00000019370 ortholog_one2many 8 retrogenes
retro_mmul_1018, retro_mmul_1080, retro_mmul_1175, retro_mmul_1219, retro_mmul_1403, retro_mmul_20, retro_mmul_767, retro_mmul_862,
Monodelphis domestica ENSMODG00000013545 ortholog_one2one 4 retrogenes
retro_mdom_1668, retro_mdom_1823, retro_mdom_815, retro_mdom_856,
Mus musculus ENSMUSG00000037563 ortholog_one2one 11 retrogenes
retro_mmus_1780, retro_mmus_2058, retro_mmus_2125, retro_mmus_2697, retro_mmus_2727, retro_mmus_3091, retro_mmus_3173, retro_mmus_3198, retro_mmus_3202, retro_mmus_700, retro_mmus_771,
Nomascus leucogenys ENSNLEG00000014388 possible_ortholog 3 retrogenes
retro_nleu_1266, retro_nleu_248, retro_nleu_46,
Otolemur garnettii ENSOGAG00000004497 possible_ortholog 4 retrogenes
retro_ogar_1229, retro_ogar_1309, retro_ogar_1313, retro_ogar_98,
Oreochromis niloticus ENSONIG00000000006 ortholog_one2one 1 retrogene
retro_onil_52,
Pelodiscus sinensis ENSPSIG00000016930 ortholog_one2one 1 retrogene
retro_psin_55,
Rattus norvegicus ENSRNOG00000019578 ortholog_one2one 3 retrogenes
retro_rnor_10, retro_rnor_1823, retro_rnor_302,
Sus scrofa ENSSSCG00000010712 possible_ortholog 1 retrogene
retro_sscr_731,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_306 86.54 95.09
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2. retro_amel_668 57.23 100.00
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3. retro_amel_840 67.05 53.37
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4. retro_amel_1105 60.61 60.12
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5. retro_amel_1143 68.24 50.92
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6. retro_amel_1463 60.00 68.10
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7. retro_amel_1790 68.90 98.77
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8. retro_amel_1865 66.26 98.77
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Download FASTA sequences of all ENSAMEG00000008470 retrocopies