Parental gene: | OTUB1, ENSBTAG00000003967 |
| Aliases: | None |
| Description: | ubiquitin thioesterase OTUB1 [Source:RefSeq peptide;Acc:NP_001029891] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 29:42882592..42889928(+) |
>ENSBTAG00000003967
ATGGCGGCGGAGGAACCTCAGCAGCAGAAGCAGGAGCCGCTTGGCAGCGACTCCGAAGGTGTTAACTGTCTTGCTTATGA
TGAAGCCATCATGGCTCAGCAGGACCGAATTCAGCAAGAGATTGCTGTGCAGAACCCACTGGTCTCGGAGCGGCTGGAGC
TCTCTGTCCTATACAAAGAGTATGCTGAGGACGACAACATCTATCAACAGAAGATCAAGGACCTCCACAAAAAGTACTCA
TACATCCGCAAGACCAGGCCTGATGGAAACTGTTTCTATCGCGCTTTCGGATTCTCCCACTTGGAGGCGTTGCTGGACGA
CAGCAAGGAATTGCAGCGGTTCAAGGCTGTGTCTGCCAAGAGCAAAGAGGACCTGGTGTCCCAGGGCTTCACTGAGTTCA
CAATTGAGGATTTCCACAACACGTTCATGGACCTGATCGAGCAGGTGGAGAAGCGGACCCCCGTGGCTGACCTGCTGGCC
TCCTTTAACGACCAGAGCACCTCGGACTACCTGGTGGTCTACCTGCGGCTGCTCACCTCAGGCTATCTGCAGCGCGAGAG
CAAGTTCTTTGAGCACTTCATCGAGGGCGGGCGCACCGTCAAGGAGTTCTGCCAGCAGGAGGTGGAGCCCATGTGCAAGG
AGAGCGACCACATCCACATCATCGCGCTGGCCCAGGCGCTCAGCGTCTCCATCCAGGTGGAGTACATGGACCGCGGCGAG
GGCGGCACCACCAACCCCCACGTCTTCCCCGAGGGCTCCGAGCCCAAGGTCTACCTGCTCTACCGGCCCGGACACTACGA
CATCCTCTACAAGTAG
ATGGCGGCGGAGGAACCTCAGCAGCAGAAGCAGGAGCCGCTTGGCAGCGACTCCGAAGGTGTTAACTGTCTTGCTTATGA
TGAAGCCATCATGGCTCAGCAGGACCGAATTCAGCAAGAGATTGCTGTGCAGAACCCACTGGTCTCGGAGCGGCTGGAGC
TCTCTGTCCTATACAAAGAGTATGCTGAGGACGACAACATCTATCAACAGAAGATCAAGGACCTCCACAAAAAGTACTCA
TACATCCGCAAGACCAGGCCTGATGGAAACTGTTTCTATCGCGCTTTCGGATTCTCCCACTTGGAGGCGTTGCTGGACGA
CAGCAAGGAATTGCAGCGGTTCAAGGCTGTGTCTGCCAAGAGCAAAGAGGACCTGGTGTCCCAGGGCTTCACTGAGTTCA
CAATTGAGGATTTCCACAACACGTTCATGGACCTGATCGAGCAGGTGGAGAAGCGGACCCCCGTGGCTGACCTGCTGGCC
TCCTTTAACGACCAGAGCACCTCGGACTACCTGGTGGTCTACCTGCGGCTGCTCACCTCAGGCTATCTGCAGCGCGAGAG
CAAGTTCTTTGAGCACTTCATCGAGGGCGGGCGCACCGTCAAGGAGTTCTGCCAGCAGGAGGTGGAGCCCATGTGCAAGG
AGAGCGACCACATCCACATCATCGCGCTGGCCCAGGCGCTCAGCGTCTCCATCCAGGTGGAGTACATGGACCGCGGCGAG
GGCGGCACCACCAACCCCCACGTCTTCCCCGAGGGCTCCGAGCCCAAGGTCTACCTGCTCTACCGGCCCGGACACTACGA
CATCCTCTACAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 53 .86 RPM |
| SRP017611_kidney | 35 .92 RPM |
| SRP017611_liver | 17 .82 RPM |
| ERP005899_muscle | 54 .95 RPM |
| ERP005899_liver | 9 .30 RPM |
| SRP030211_testis | 116 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000018084 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000014729 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000002621 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012235 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000013314 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000017099 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000021175 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000004156 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1119 | 67.03 | 67.16 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000003967 retrocopies