RetrogeneDB ID: | retro_mputfur_1057 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897003.1:1380961..1381438(-) | ||
Located in intron of: | ENSMPUG00000010748 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OTUB1 | ||
Ensembl ID: | ENSMPUG00000013314 | ||
Aliases: | None | ||
Description: | OTU domain, ubiquitin aldehyde binding 1 [Source:HGNC Symbol;Acc:23077] |
Percent Identity: | 62.96 % |
Parental protein coverage: | 59.04 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LAYDEAIMAQQDRIQQEIAVQNPLVSERLELS-VLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCF |
LAYDE...AQQD.IQ..IAVQNPL..E.LEL...LY.EYAEDD.I.QQKI..L..K..YI.KTR...NCF | |
Retrocopy | LAYDEDTVAQQD*IQ*KIAVQNPLFLELLELT<ILYREYAEDD-ICQQKIEHLYQKFLYIYKTRLYVNCF |
Parental | YRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTI-EDFHNTFMDLIEQVEKQTSVADLLAS |
..A.G..HLE.LL..SKE...FK.VSAK.KE.LVSQ.FTEFT....FH..F.DLIEQ.EK.TSV..LLAS | |
Retrocopy | SCASGCLHLEVLLNVSKEF*QFKPVSAKIKENLVSQAFTEFTV>KHFHPCFTDLIEQMEKHTSVVNLLAS |
Parental | FNDQSTSDYLVVYLRLLTSGYL |
F....T.D.L.V.L.LLTSGYL | |
Retrocopy | FSS*GTLDFLLVSLQLLTSGYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018084 | 1 retrocopy | |
Bos taurus | ENSBTAG00000003967 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014729 | 2 retrocopies | |
Equus caballus | ENSECAG00000002621 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012235 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013314 | 1 retrocopy |
retro_mputfur_1057 ,
|
Pteropus vampyrus | ENSPVAG00000017099 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000021175 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004156 | 1 retrocopy |