RetrogeneDB ID: | retro_cfam_2023 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | JH373239.1:706956..707542(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OTUB1 | ||
Ensembl ID: | ENSCAFG00000014729 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris OTU domain, ubiquitin aldehyde binding 1 (OTUB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251947] |
Percent Identity: | 79.21 % |
Parental protein coverage: | 72.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | LHK-KYSYIRKTRPD-GNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVS-QGFTEFTIEDFHNT |
LHK.K.SYIRKTR....NCFY.A.GFSHLEAL.DDS.ELQRF.AVSAK..E.LVS.QGF.E.TIEDFH.T | |
Retrocopy | LHK<KHSYIRKTRRE<ANCFYGASGFSHLEALPDDSEELQRFEAVSAKGQEALVS<QGFPEATIEDFHST |
Parental | FMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFF-EHFIEGGRTVKEFCQQEVEP |
F..L.E.VEKQTSVADLLASF...STSDYLVVYLRLLTSG.LQ..SKFF..HF.EGGRTV.EFCQQEVEP | |
Retrocopy | FVGLMERVEKQTSVADLLASFHGHSTSDYLVVYLRLLTSGSLQCQSKFF<QHFLEGGRTVQEFCQQEVEP |
Parental | MCKESDHIHIIALAQALSVSIQVEYMDRG-EGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK |
.CKESDHIH..ALAQALSVS.QVE.MDR..EGGTTNPH.FPEGSEPKVYLL.RPGHY.ILYK | |
Retrocopy | TCKESDHIHSTALAQALSVSVQVEHMDRA<EGGTTNPHTFPEGSEPKVYLLCRPGHYHILYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .17 RPM | 36 .03 RPM |
SRP017611_brain | 1 .59 RPM | 42 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .75 RPM |
SRP017611_liver | 0 .00 RPM | 4 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018084 | 1 retrocopy | |
Bos taurus | ENSBTAG00000003967 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014729 | 2 retrocopies |
retro_cfam_1376, retro_cfam_2023 ,
|
Equus caballus | ENSECAG00000002621 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012235 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013314 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017099 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000021175 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004156 | 1 retrocopy |