RetrogeneDB ID: | retro_pvam_131 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1551:8068..8527(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OTUB1 | ||
Ensembl ID: | ENSPVAG00000017099 | ||
Aliases: | None | ||
Description: | OTU domain, ubiquitin aldehyde binding 1 [Source:HGNC Symbol;Acc:23077] |
Percent Identity: | 72.55 % |
Parental protein coverage: | 60.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRE |
.SAK.KEDLV.Q.FT.FTI.DFHN.F.DLIEQV.KQTSVA.LLASFNDQST..YLVVY..LLTSG.LQ.. | |
Retrocopy | LSAKIKEDLVFQRFTKFTIKDFHNIFTDLIEQVKKQTSVAYLLASFNDQSTCNYLVVYQQLLTSGHLQHN |
Parental | SKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPK |
SKF.E..I.G..TVKEFC.QEVEPMCKE.DHI..I.LAQA.SVSIQ.E..D.GE..TT..HI..EGSEPK | |
Retrocopy | SKFSEYYIKGV*TVKEFCHQEVEPMCKETDHIYVITLAQAFSVSIQMEDIDHGEDNTTSRHISSEGSEPK |
Parental | VYLLYRPGHYDIL |
VYLL..PGHY.IL | |
Retrocopy | VYLLSWPGHYSIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018084 | 1 retrocopy | |
Bos taurus | ENSBTAG00000003967 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014729 | 2 retrocopies | |
Equus caballus | ENSECAG00000002621 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012235 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013314 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017099 | 2 retrocopies |
retro_pvam_131 , retro_pvam_274,
|
Rattus norvegicus | ENSRNOG00000021175 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004156 | 1 retrocopy |