RetrogeneDB ID: | retro_cfam_1376 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 3:40225683..40226493(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000013279 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OTUB1 | ||
Ensembl ID: | ENSCAFG00000014729 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris OTU domain, ubiquitin aldehyde binding 1 (OTUB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251947] |
Percent Identity: | 97.78 % |
Parental protein coverage: | 99.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AAEEPQQQKQELFGFLLPGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQK |
AAEEPQQQKQE..G....GVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQK | |
Retrocopy | AAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQK |
Parental | IKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT |
IKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT | |
Retrocopy | IKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT |
Parental | FMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPM |
FMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPM | |
Retrocopy | FMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPM |
Parental | CKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK |
CKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK | |
Retrocopy | CKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 6 .64 RPM | 36 .03 RPM |
SRP017611_brain | 5 .16 RPM | 42 .87 RPM |
SRP017611_kidney | 3 .57 RPM | 19 .75 RPM |
SRP017611_liver | 0 .44 RPM | 4 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018084 | 1 retrocopy | |
Bos taurus | ENSBTAG00000003967 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014729 | 2 retrocopies |
retro_cfam_1376 , retro_cfam_2023,
|
Equus caballus | ENSECAG00000002621 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012235 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013314 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017099 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000021175 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004156 | 1 retrocopy |