Parental gene: | OTUB1, ENSCAFG00000014729 |
| Aliases: | None |
| Description: | Canis lupus familiaris OTU domain, ubiquitin aldehyde binding 1 (OTUB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251947] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 18:53034386..53041470(-) |
>ENSCAFG00000014729
AAGGCGGCGGAGGAGCCTCAGCAGCAGAAGCAGGAGCTCTTTGGCTTCCTTCTTCCAGGTGTTAACTGTCTTGCTTATGA
TGAAGCCATCATGGCTCAGCAGGACCGAATTCAGCAAGAGATTGCTGTGCAGAACCCTCTGGTCTCAGAGCGGCTGGAGC
TTTCGGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTATCAACAGAAGATCAAGGACCTCCACAAAAAGTACTCC
TACATCCGCAAGACCAGGCCTGATGGAAACTGTTTCTACCGAGCTTTCGGATTCTCCCACTTGGAGGCGCTGCTGGATGA
CAGCAAGGAATTGCAGCGGTTTAAGGCTGTGTCTGCCAAGAGCAAAGAGGACCTGGTGTCCCAGGGCTTCACTGAATTCA
CAATCGAGGATTTCCACAACACGTTCATGGACCTGATCGAGCAGGTGGAGAAGCAGACCTCTGTAGCTGACCTGCTGGCC
TCCTTCAACGACCAGAGTACCTCGGACTACCTGGTGGTGTACCTGCGGCTGCTCACCTCCGGCTACCTGCAGCGCGAGAG
CAAGTTCTTCGAGCACTTCATCGAGGGCGGGCGGACAGTCAAGGAGTTCTGCCAGCAGGAGGTGGAGCCCATGTGCAAGG
AGAGCGACCACATTCACATCATCGCACTGGCCCAGGCTCTGAGCGTCTCCATCCAGGTGGAGTACATGGACCGCGGCGAG
GGCGGCACCACCAACCCGCACATCTTCCCCGAGGGCTCTGAGCCCAAGGTGTACCTTCTCTACCGGCCTGGACACTACGA
TATCCTCTACAAATAG
AAGGCGGCGGAGGAGCCTCAGCAGCAGAAGCAGGAGCTCTTTGGCTTCCTTCTTCCAGGTGTTAACTGTCTTGCTTATGA
TGAAGCCATCATGGCTCAGCAGGACCGAATTCAGCAAGAGATTGCTGTGCAGAACCCTCTGGTCTCAGAGCGGCTGGAGC
TTTCGGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTATCAACAGAAGATCAAGGACCTCCACAAAAAGTACTCC
TACATCCGCAAGACCAGGCCTGATGGAAACTGTTTCTACCGAGCTTTCGGATTCTCCCACTTGGAGGCGCTGCTGGATGA
CAGCAAGGAATTGCAGCGGTTTAAGGCTGTGTCTGCCAAGAGCAAAGAGGACCTGGTGTCCCAGGGCTTCACTGAATTCA
CAATCGAGGATTTCCACAACACGTTCATGGACCTGATCGAGCAGGTGGAGAAGCAGACCTCTGTAGCTGACCTGCTGGCC
TCCTTCAACGACCAGAGTACCTCGGACTACCTGGTGGTGTACCTGCGGCTGCTCACCTCCGGCTACCTGCAGCGCGAGAG
CAAGTTCTTCGAGCACTTCATCGAGGGCGGGCGGACAGTCAAGGAGTTCTGCCAGCAGGAGGTGGAGCCCATGTGCAAGG
AGAGCGACCACATTCACATCATCGCACTGGCCCAGGCTCTGAGCGTCTCCATCCAGGTGGAGTACATGGACCGCGGCGAG
GGCGGCACCACCAACCCGCACATCTTCCCCGAGGGCTCTGAGCCCAAGGTGTACCTTCTCTACCGGCCTGGACACTACGA
TATCCTCTACAAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 42 .87 RPM |
| SRP017611_kidney | 19 .75 RPM |
| SRP017611_liver | 4 .57 RPM |
| SRP012049_cerebellum | 36 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000018084 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000003967 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000002621 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012235 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000013314 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000017099 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000021175 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000004156 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1376 | 97.78 | 99.63 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_2023 | 79.21 | 72.69 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000014729 retrocopies