RetrogeneDB ID: | retro_rnor_2431 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:18452484..18453291(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000009072 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Otub1 | ||
Ensembl ID: | ENSRNOG00000021175 | ||
Aliases: | None | ||
Description: | Ubiquitin thioesterase OTUB1 [Source:UniProtKB/Swiss-Prot;Acc:B2RYG6] |
Percent Identity: | 95.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQ |
MAAEEPQQQKQEPLGSDSEGVNCL.YDEAIMAQQD.IQQEIAVQNPLVSERLELSVLY.EYAEDDNIYQQ | |
Retrocopy | MAAEEPQQQKQEPLGSDSEGVNCLVYDEAIMAQQDQIQQEIAVQNPLVSERLELSVLYNEYAEDDNIYQQ |
Parental | KIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHN |
K...LHKKYSYIRKTRPD.NCFY.AFGFSHLEALLDDSKELQRFKA.SAKSKEDLVSQGFTEFTIEDFHN | |
Retrocopy | K--NLHKKYSYIRKTRPDRNCFYPAFGFSHLEALLDDSKELQRFKAMSAKSKEDLVSQGFTEFTIEDFHN |
Parental | TFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEP |
TFMDLIEQVEKQTSVADLLASFNDQSTS.YLVVYLRLLTSGYLQR.SKFFEHFIEGG.TVKEFCQQEVEP | |
Retrocopy | TFMDLIEQVEKQTSVADLLASFNDQSTSHYLVVYLRLLTSGYLQRKSKFFEHFIEGGQTVKEFCQQEVEP |
Parental | MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILYK |
MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILYK | |
Retrocopy | MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 49 .06 RPM |
SRP017611_liver | 0 .00 RPM | 21 .38 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018084 | 1 retrocopy | |
Bos taurus | ENSBTAG00000003967 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014729 | 2 retrocopies | |
Equus caballus | ENSECAG00000002621 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012235 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000013314 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017099 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000021175 | 1 retrocopy |
retro_rnor_2431 ,
|
Sarcophilus harrisii | ENSSHAG00000004156 | 1 retrocopy |