Parental gene: | ZSCAN4, ENSCPOG00000005419 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_175:1246764..1249143(+) |
>ENSCPOG00000005419
ATGGCTTTAGATCTCAGAAAATCATTTTGCCAAGAACTCTCCTCAAATAACCTTGAATCAGAAGATCTAGAATTTTCATC
AACCCAAGGTTTTGCTGTCCCAAAGAGAGAGATCTCTGCATTCTCAAGCATTCAACTCAACTCATTGCAATACAGTGATA
ACTCAGAAGCAAGGAAGGAACTACAAAGACTGTATGAGTTTTTTCACTCATGGTTGCAGCCAGAAAATCATAGCAAGGAT
CAGATTATTGCTCAGTTAGCCATGGAGCAGTTTATGCTTAGTGGCCGCTGCAGGGACAAGTCTATATTGAAAAAGAAATG
GGAATCAAGTGGTAAAAACCTGGAGAAATTACTGGAAGACTTGACAGATGATTGTATGAAGCCACCTGTGTTAGTCCATG
TCTGCATGCAGGGACAGGAAGCACTGTTCTCTGAGGATATGCCCTTGAAAGAAGTCATTGCTCATCTCACGAAACAGTCA
TCAGCAAAAACCTTTACAGCAGGTATGGGCACAGCCCACCAGGTTTCCCAAAATGCTCCTTTGGGAACAAGACAAGGAAA
TGAACATGAAGAAGATGGCTGCACTAGTTCCTGGGAAGTAACTCAAGTAAATGACTATATTACCAATCCAGGAAAAGAAA
TAGTTTCCCTGCTCATTATTCCAGAAGCAAATGATCCTACACCTGTAGAGGAAAGTGCTTCTTGGGAGAATACACACAGC
TCCAGAAAAGCAAGGCCAGTCATATGTGGATTGCAAGAAGAGTCCCAGAAAGGACCTTCTTACCAAGATGTCCCTATGGA
TGTGGGACCAGGATCTTCCTCTCTGCCACATCAATCCTCCTCTGAGCCAGTCTCTAATCACCACTGCAGTGAAGGAAACT
CTGCCTGTGAGGAATCCCAAGAAAGATTCCATGAATCGCCCAAATCATACAAATGTGAGGAATGTCCCAAGACCTTTAAG
TATCTCTCTCATTTCCTAGCCCACCAAAGATGCCACAGAAGCTTCCGC
ATGGCTTTAGATCTCAGAAAATCATTTTGCCAAGAACTCTCCTCAAATAACCTTGAATCAGAAGATCTAGAATTTTCATC
AACCCAAGGTTTTGCTGTCCCAAAGAGAGAGATCTCTGCATTCTCAAGCATTCAACTCAACTCATTGCAATACAGTGATA
ACTCAGAAGCAAGGAAGGAACTACAAAGACTGTATGAGTTTTTTCACTCATGGTTGCAGCCAGAAAATCATAGCAAGGAT
CAGATTATTGCTCAGTTAGCCATGGAGCAGTTTATGCTTAGTGGCCGCTGCAGGGACAAGTCTATATTGAAAAAGAAATG
GGAATCAAGTGGTAAAAACCTGGAGAAATTACTGGAAGACTTGACAGATGATTGTATGAAGCCACCTGTGTTAGTCCATG
TCTGCATGCAGGGACAGGAAGCACTGTTCTCTGAGGATATGCCCTTGAAAGAAGTCATTGCTCATCTCACGAAACAGTCA
TCAGCAAAAACCTTTACAGCAGGTATGGGCACAGCCCACCAGGTTTCCCAAAATGCTCCTTTGGGAACAAGACAAGGAAA
TGAACATGAAGAAGATGGCTGCACTAGTTCCTGGGAAGTAACTCAAGTAAATGACTATATTACCAATCCAGGAAAAGAAA
TAGTTTCCCTGCTCATTATTCCAGAAGCAAATGATCCTACACCTGTAGAGGAAAGTGCTTCTTGGGAGAATACACACAGC
TCCAGAAAAGCAAGGCCAGTCATATGTGGATTGCAAGAAGAGTCCCAGAAAGGACCTTCTTACCAAGATGTCCCTATGGA
TGTGGGACCAGGATCTTCCTCTCTGCCACATCAATCCTCCTCTGAGCCAGTCTCTAATCACCACTGCAGTGAAGGAAACT
CTGCCTGTGAGGAATCCCAAGAAAGATTCCATGAATCGCCCAAATCATACAAATGTGAGGAATGTCCCAAGACCTTTAAG
TATCTCTCTCATTTCCTAGCCCACCAAAGATGCCACAGAAGCTTCCGC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM |
| SRP017611_brain | 0 .12 RPM |
| SRP040447_lung | 0 .10 RPM |
| SRP040447_skeletal_muscle | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000011483 | ortholog_one2one | 11 retrogenes | |
| Equus caballus | ENSECAG00000015200 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003257 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000023779 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_285 | 78.93 | 76.19 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1470 | 58.65 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000005419 retrocopies