RetrogeneDB ID: | retro_dnov_964 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_127756:661..1314(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSDNOG00000011483 | ||
Aliases: | None | ||
Description: | zinc finger and SCAN domain containing 4 [Source:HGNC Symbol;Acc:23709] |
Percent Identity: | 68.16 % |
Parental protein coverage: | 50.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MALDLRTSFRHDPSRSGHPGSHNLELEPTQGCDLQ-RREGNSKFQGPQLSLYQTSNGSFAKQELKRLRKV |
M.LDLRTSF.HDPS.S..PGS.NL..EPTQG.D.Q.R..G......PQLSL.....GSF..QEL.RL.KV | |
Retrocopy | MSLDLRTSFEHDPS-SSDPGSDNLDFEPTQGPDVQ>REKGTAN---PQLSLCEINSGSFVRQELRRLSKV |
Parental | FHLWLQPEKHSKEEIISQLILEQLVMNGYCRNRSILKEKWDSSGRNLEKLVGELN-DDCMKSPDFVHVHM |
FHLWL.PEK.SKEEII..L.LE...MNG.CRNRSIL.EKWD.SGRNLEK....LN.DDCM.S..FVHV.M | |
Retrocopy | FHLWLHPEKQSKEEIIYHLVLEEFMMNGHCRNRSILREKWDPSGRNLEKVIEDLN>DDCMTSSGFVHVFM |
Parental | QGQEALFSENMPLREVIY-LMEQMPAGTPRGESMRTPFQGPQNIPLQTGHGDEYKDD-SNIFVKRNQINV |
Q....LFSENMPLREVI..LMEQ...GTPRGESMRTPFQ.PQ.I.LQTG.GDEYK.D.SNI.V..NQ.N. | |
Retrocopy | QNRKPLFSENMPLREVIFHLMEQTLVGTPRGESMRTPFQDPQYIALQTGQGDEYKEDGSNISVNTNQVND |
Parental | NITSQGNQVPYVV |
.ITSQGNQVP..V | |
Retrocopy | SITSQGNQVPSLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .14 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies | |
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |