RetrogeneDB ID: | retro_dnov_2666 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_96326:6360..7054(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSDNOG00000011483 | ||
Aliases: | None | ||
Description: | zinc finger and SCAN domain containing 4 [Source:HGNC Symbol;Acc:23709] |
Percent Identity: | 62.08 % |
Parental protein coverage: | 54.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | LKEKWDSSGRNLEKLVGELNDDCMKSPDFVHVHMQGQEALFSENMPLREVIYLME-QMPAGTPRGESMRT |
L...WDSSGR.LEKL...L..DCM.SPDFVHV.MQGQEA.FSENM.LRE........M.AGTPR..S.RT | |
Retrocopy | LRGNWDSSGRILEKLMEDLTIDCMRSPDFVHVYMQGQEAHFSENMTLRELFISWQ>KMSAGTPREGSRRT |
Parental | PFQGPQNIPLQTGHGDEYKDDSNIFVKRNQINVNITSQGNQVPY-VVIIQEDDS-PKPEEGSGSWKNLHN |
PF.GPQN.PL.TG...EY.....I..K.....V..T...N..P..V.I.QED...PKPEEG.G.W.NLHN | |
Retrocopy | PFHGPQNSPLRTGQAEEYQQFCDIPIK--*MTVLLTESINDLPW<VII-QEDNT<PKPEEGCGTWENLHN |
Parental | FRRAELGSPTSQEGSLGESSSQDVPMEVETQFLPRTDQASPKPALTNQSSDGTSRCGINQERVHSPPKSY |
.RRAELGS..SQ.GSLG..SSQDV.MEVE.QFLPR.D.A..KP..TNQS.DG..RCGINQE.VHS.PKS. | |
Retrocopy | SRRAELGSSISQKGSLG-*SSQDVLMEVEPQFLPRIDLAISKPFPTNQSNDGIYRCGINQESVHSYPKSH |
Parental | KCEDCPRIFRF-PSQLEAHQRRHRNERPFV |
K.E.CPRI.R..P.QL..HQRRH.N.R.FV | |
Retrocopy | KYENCPRILRY<PAQLDTHQRRHKNVRSFV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .14 RPM | 0 .14 RPM |
SRP012922_heart | 0 .23 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .31 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .11 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies |
retro_dnov_1048, retro_dnov_1253, retro_dnov_1287, retro_dnov_1505, retro_dnov_174, retro_dnov_1780, retro_dnov_2499, retro_dnov_2556, retro_dnov_2666 , retro_dnov_859, retro_dnov_964,
|
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |