RetrogeneDB ID: | retro_dnov_1253 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_169999:2731..3392(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSDNOG00000011483 | ||
Aliases: | None | ||
Description: | zinc finger and SCAN domain containing 4 [Source:HGNC Symbol;Acc:23709] |
Percent Identity: | 57.52 % |
Parental protein coverage: | 51.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SKEEIISQLILEQLVMNGYCRNRSILKEKWDSSGRNLEKLVGELNDDCMKSPDFVHVHMQGQEALFSENM |
S..E....L....L.MNGYC.NRS.L.E.WDS.GRN..KL...L..DCMKSPDFV.V.MQ.QE..FS.NM | |
Retrocopy | SSLETSKKLFIWPLMMNGYCGNRSTLRETWDSCGRNM*KLMEDLTYDCMKSPDFVLVYMQEQEDCFSGNM |
Parental | PLREVIYLMEQMPAGTPRGESMRTPFQGPQNIPLQTGHGDEYKDDSNIFVKRNQINVNITSQGNQVPYVV |
PLREVI.L.EQMPAGT.R.ES.RT.FQG...I.LQ.G.GDEY.....I..K..QI.V.........P... | |
Retrocopy | PLREVINLIEQMPAGTQREESIRTTFQGSLDISLQIGQGDEYQHFCHIPIK--QITVLLVKAIRYIPW-L |
Parental | IIQEDDSPKPEEGSGSWKNLHNFRRAELGSPTSQEGSLGESSSQDVPMEVETQ-FLPRT-DQASPKPALT |
.....D.P.PEE.SGSW.N.HN.RR.EL.S..SQ.GSL....SQD.PMEVETQ.FLPRT..QAS.KP..T | |
Retrocopy | LFRKMDIPNPEERSGSWVNPHNSRREELDSSISQKGSL*GFTSQDIPMEVETQ>FLPRT>KQASMKPVPT |
Parental | NQSSDGT-SRCGINQE |
NQS.DGT..RC..N.E | |
Retrocopy | NQSNDGT<NRCEMN*E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .14 RPM |
SRP012922_heart | 0 .23 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .23 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies |
retro_dnov_1048, retro_dnov_1253 , retro_dnov_1287, retro_dnov_1505, retro_dnov_174, retro_dnov_1780, retro_dnov_2499, retro_dnov_2556, retro_dnov_2666, retro_dnov_859, retro_dnov_964,
|
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |