RetrogeneDB ID: | retro_dnov_1287 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_17653:50967..51932(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSDNOG00000011483 | ||
Aliases: | None | ||
Description: | zinc finger and SCAN domain containing 4 [Source:HGNC Symbol;Acc:23709] |
Percent Identity: | 63.72 % |
Parental protein coverage: | 74.36 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | LQPEKHSKEEIISQLILEQLVMNGYCRNRSILKEKWDSSGRNLEKLVGELNDDCMKSPDFVHVHMQGQEA |
LQPEKHSKEEII..L.LEQ...NG.CRNR..L.EK..S..RN.EKL...LNDDC..S..FV.VHMQGQEA | |
Retrocopy | LQPEKHSKEEIIYKLVLEQFMVNGHCRNRPTLREK*ESR*RNPEKLMENLNDDCTESTGFVRVHMQGQEA |
Parental | LFSENMPLREVIY-LMEQMPAGTPRGESMRTPFQGPQNIPLQTGHGDEYKDD-SNIFVKRNQINVNITSQ |
..SENMP.REVI...MEQ.P.GTP..ESMRT.FQG...IPLQTG.GDEYK.D..N..VK.NQ.N..ITSQ | |
Retrocopy | ILSENMP*REVIFHPMEQIPVGTPK*ESMRTSFQGSRDIPLQTGQGDEYKEDGTNVSVKTNQVNDTITSQ |
Parental | GNQVPYVVIIQEDDSPKPEEGSGSWKNLHNFRRAELGSPTSQEGSLGESSSQDVPMEVETQFLPRTDQAS |
GNQV...VII.....P.PE.GS.SW.NLHN.RR.E..S.TSQEG.LG..S...VPMEV..QFLPR.DQ.S | |
Retrocopy | GNQVLSLVIILQGNCPNPEDGSVSWENLHNSRRTEPASSTSQEGYLGGPSYHNVPMEVGPQFLPRPDQGS |
Parental | PKPAL-TNQSSDGTSRCGINQERVHS-PPKS-YKCEDCPRIFRFPSQLEAHQRRHRNERPFVCTECHKGF |
P...L.T.QS.DGTSR.G.NQE..H...P.S.Y.CEDC.R..R..SQL.AHQRRHRNERPF.C..CHKGF | |
Retrocopy | PPLSL<TDQSNDGTSRRGLNQEQIHG<SPNS<YRCEDCLRVSRYLSQLSAHQRRHRNERPFICA-CHKGF |
Parental | FQTSDLHVHQKIHMAEKPFRC-SSCERSFSHKTNLLAHERIHSGDKPY |
..T..LHVH.K.H.AEKPFR..S.CE.SF.HKT.L.A.ERIH....P. | |
Retrocopy | LWTPQLHVHLKSHTAEKPFRA<STCEKSFNHKTSLWAPERIHFRERPF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .14 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies |
retro_dnov_1048, retro_dnov_1253, retro_dnov_1287 , retro_dnov_1505, retro_dnov_174, retro_dnov_1780, retro_dnov_2499, retro_dnov_2556, retro_dnov_2666, retro_dnov_859, retro_dnov_964,
|
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |