RetrogeneDB ID: | retro_cpor_1470 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:26828447..26829444(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSCPOG00000005419 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 4 |
Parental | MALDLRKSFCQELSSNNLESEDLEFSSTQGFAVPKREISAFSSIQLNSLQYSDNSEARKELQRLYEFFHS |
MALDL..SF..E...N.LESE.LEF.STQG.AVP.R.IS.FSS..LN..QY.D.S.AR......Y.FF.S | |
Retrocopy | MALDLGNSFFHEPFPNKLESENLEFKSTQGSAVPRRVISEFSSTELNTFQYTDKSWARRKY-KVYKFFPS |
Parental | WLQPENHSKDQIIAQLAMEQFMLSGRCRDKSILKKKWESSGKNLEKLLEDLTDDCMKPPVLVHVCMQGQE |
.LQ.E.HSKD.I..QL.MEQFMLS...RDK..LKKK..SS.KNLEK..EDLTD.CMKPPVLV.VC.QGQE | |
Retrocopy | *LQREKHSKDAITSQLTMEQFMLSDLARDKTMLKKKQKSSYKNLEKFVEDLTDGCMKPPVLVYVCLQGQE |
Parental | ALFSEDMPLKEVIAHLTKQSSAKTFTA-GMGTAHQVSQNAPLGTRQGNEHEEDGCTSSWEVTQVNDYITN |
ALFSED...KEVI....KQ.SA.T.....M.T..QVSQNAPL.TRQG.E...DGC....E.TQVN..ITN | |
Retrocopy | ALFSEDTS*KEVIVNF*KQLSAETLRGENM*TSCQVSQNAPLETRQGSEYKVDGCSNF*EITQVNGNITN |
Parental | PGKEIVSLLIIPEANDPTPVEESASWENTHSSRKARPVICGLQEESQKGPSYQDV-PMDVGPGSSSLPH- |
PGKEI..LLII.E.N.P.P.....SWE.....R.AR.....LQEESQKGPS.QDV.PMDVGPG..S..H. | |
Retrocopy | PGKEIALLLIILEENCPRPEKKGVSWESPPNCRRARLDT*RLQEESQKGPSNQDV<PMDVGPGLFSRSH< |
Parental | QSSSEPV-SNHHCSEGNSACE-ESQERFHESPKSYKCEECPKTFKYLSHFLAHQRCHRSFR |
QSS.E......H..E.N..CE.....RFH..P.SYK....PKTF..L.H...H.R.HR..R | |
Retrocopy | QSSPELT<PTYHTNE*NCTCE>DPKKRFHGYPGSYK---WPKTFR*LTHLFTHKRRHRNER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
SRP040447_lung | 0 .03 RPM | 0 .10 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies |
retro_cpor_1470 , retro_cpor_285,
|
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies | |
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |