RetrogeneDB ID: | retro_dnov_859 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_11497:37714..38498(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSDNOG00000011483 | ||
Aliases: | None | ||
Description: | zinc finger and SCAN domain containing 4 [Source:HGNC Symbol;Acc:23709] |
Percent Identity: | 55.68 % |
Parental protein coverage: | 60.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MALDLRTSFRHDPSRSGHPGSHNLELEPTQGCDLQRREGNSKFQGPQLSLYQTSNGSFAKQELKRLRKVF |
MALDLRTSF...PSR....GS.N.E.EPTQ....Q..E....FQ...L...Q..N.S....E..RL.K.F | |
Retrocopy | MALDLRTSFQREPSRNDC-GSENIEFEPTQRSGVQKGEEIFDFQITRLNSFQNDN-SCVRKEVQRLHKFF |
Parental | HLWLQPEKHSKEEIISQLILEQLVMNGYCRNRSILKEKWDSSGRNLEKLVGELNDDCMKSPDFVHVHMQG |
HLWLQPEKH.K.EIISQL.LEQ...NG..RNR..LK.KW.SSGRNL........DDCM..P.FVHVHM.G | |
Retrocopy | HLWLQPEKHTKDEIISQLVLEQFMLNGHSRNRASLKKKWESSGRNLDRFMEDVTDDCMNPPGFVHVHMRG |
Parental | QEALFSENMPLREV-IYLMEQMPAGTPRGESMRTPFQGPQNIPLQTGHGDEYKD-DSNIFVKRNQINVNI |
QEALFSENM.LREV.I.L..Q..AG...G.S.R.P.......PLQT...DE.K..D.NI..K..Q...NI | |
Retrocopy | QEALFSENMSLREVIIQLKGQSLAGSSTGQSRRMPCWYA*DTPLQTEQEDELKEGDPNISGKITQEIDNI |
Parental | TSQGNQVPYVVIIQEDDSPKPEEGSGSWKNLHNFRRAELGSP-TSQEGSLGESS |
.SQ.NQVP...I.QE....K.EEG..SW.NLHN.RR..LGSP..SQEGSL...S | |
Retrocopy | MSQSNQVPSPIITQEENCNKSEEGGISWENLHNSRRTKLGSP>KSQEGSLERPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .14 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .15 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies | |
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |