RetrogeneDB ID: | retro_dnov_1048 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_14070:11547..12434(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSDNOG00000011483 | ||
Aliases: | None | ||
Description: | zinc finger and SCAN domain containing 4 [Source:HGNC Symbol;Acc:23709] |
Percent Identity: | 60.59 % |
Parental protein coverage: | 70.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | PTQGCDLQRREGNSKFQGPQLSLYQTSNGSFAKQELKRLR-KVFHLWLQPEKHSKEEIISQLILEQLVMN |
P.QG.....R..NSKFQ..QLS.YQT.NGSF.KQ.LK....K.FHLWLQP..HSKEEIISQL.LEQL.MN | |
Retrocopy | PIQGTNV*KRGVNSKFQCSQLSPYQTNNGSFEKQKLKIIL>KAFHLWLQPDNHSKEEIISQLLLEQLMMN |
Parental | GYCRNRSILKEKWDSSGRNLEKLVGELNDDCMKSPDFVHVHMQGQEALFSENMPLREVIYLMEQMPAGTP |
GYC.N.S.L.....SS.R.LEKL...L..D.M.SPDFVHVHMQGQEA.FSENM.L.....LM.......P | |
Retrocopy | GYCKNWSTLRGNCNSSRRILEKLMEDLTNDYMRSPDFVHVHMQGQEAHFSENMTLS--THLMGKNVSRNP |
Parental | RGESMRTPFQGPQNIPLQTGHGDEYKDDSNIFVKRNQINVNITSQGNQVPY-VVIIQEDDSPKPEEGSGS |
...SMRTPF.GPQNIPLQT.H..EY.....I..K.....V......N..P..V.I.QED.SPKPEEG.G. | |
Retrocopy | K--SMRTPFHGPQNIPLQTEHAGEYQQFCDIPIK--SMTVLLIESINYLPW<VII-QEDNSPKPEEGCGT |
Parental | WKNLHNFRRAELGSPTSQEGSLGESSSQDVPMEVETQFLPRTDQASPKPALTNQSSDGTSRCGINQERVH |
W.NLHN.RRAELGS..SQ.GSL....SQDVP.EVE.QFL.R.D.AS.KP..T.QS...TSR.GINQE.VH | |
Retrocopy | WENLHNSRRAELGSSVSQKGSL-RGPSQDVPVEVEPQFLLRIDLASSKPVPTKQSNYSTSRHGINQESVH |
Parental | SPPKSYKCEDCPRIFRF-PSQLEAHQR |
S.PKSYKCE..PRI.R..P.QL...QR | |
Retrocopy | SSPKSYKCENYPRITRY<PLQLDTYQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .97 RPM | 0 .00 RPM |
SRP012922_cerebellum | 1 .51 RPM | 0 .14 RPM |
SRP012922_heart | 0 .23 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .82 RPM | 0 .00 RPM |
SRP012922_liver | 0 .62 RPM | 0 .00 RPM |
SRP012922_lung | 0 .92 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .92 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies |
retro_dnov_1048 , retro_dnov_1253, retro_dnov_1287, retro_dnov_1505, retro_dnov_174, retro_dnov_1780, retro_dnov_2499, retro_dnov_2556, retro_dnov_2666, retro_dnov_859, retro_dnov_964,
|
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |