RetrogeneDB ID: | retro_cpor_285 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_118:3706514..3707274(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZSCAN4 | ||
Ensembl ID: | ENSCPOG00000005419 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.93 % |
Parental protein coverage: | 76.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MALDLRKSFCQELSSNNLESEDLEFSSTQGFAVPK-REISAFSSIQLNS-LQYSDNSEARKELQRLYEFF |
M.LDLRKSFCQE.SS.NLESEDLEF.S.Q....PK.REISAFSSIQLNS..Q.SDNS.ARKELQR.YE.F | |
Retrocopy | MTLDLRKSFCQEPSSDNLESEDLEFPSSQD--LPK>REISAFSSIQLNS<IQCSDNSGARKELQRCYECF |
Parental | HSWLQPENHSKDQIIAQLAMEQFMLSGRCRDKSIL-KKKWESSGKNLEKLLEDLTDDCMKPP-VLVHVCM |
HSW.Q.ENHSKD.IIAQLAME.FMLSGRC.DKS.L....WESSGKNL.KLLEDLTDDCMKPP.VLVHVC. | |
Retrocopy | HSWSQAENHSKDEIIAQLAME*FMLSGRCKDKSML<XXXWESSGKNLQKLLEDLTDDCMKPP<VLVHVCT |
Parental | QGQEALFSEDMPLKEVIAHLTKQSSAKTFTA-GMGTAHQVSQNAPLGTRQGNEHEEDGCTSSWEVTQVND |
QGQEA.FSEDMPLKEVI.HL.KQ.SAKTFTA...GTAHQ.SQ.APL.TRQG.EHE.D.CTS.WEVTQVND | |
Retrocopy | QGQEAPFSEDMPLKEVIIHLMKQLSAKTFTAENLGTAHQASQDAPLETRQGREHEKD-CTSAWEVTQVND |
Parental | YITNPGKEIVSLLIIPEANDPTPVEESASWENTHSSRKARPVICGLQEESQ |
.ITNPGKE.VSLL.IPEANDP.P.E.SASWENTHSSRKARP..CGL....Q | |
Retrocopy | HITNPGKETVSLLTIPEANDPIPLEGSASWENTHSSRKARPDMCGLEPSYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .12 RPM |
SRP017611_kidney | 0 .10 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
SRP040447_lung | 0 .00 RPM | 0 .10 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005419 | 2 retrocopies |
retro_cpor_1470, retro_cpor_285 ,
|
Dasypus novemcinctus | ENSDNOG00000011483 | 11 retrocopies | |
Equus caballus | ENSECAG00000015200 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003257 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023779 | 1 retrocopy |