RetrogeneDB ID:

retro_ggor_2712

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:8:38648766..38649100(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS20
Ensembl ID:ENSGGOG00000001837
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2712
GCTTTTAAAGATACCAAAAAACACCTGTGAAGCTGGAGGTGACCATTCACCAAATTCGAATCCCTCTAATGAGCCGCAGC
GTAAAATCCCTGGAGGAAGGTGTGTGCTGACTTGATTCAGAGGAGGAAAGGAAAAGAATGTCAAGGTGAAGGGACCAGTT
TGAATGCCTGCCAAGACTTTGAGAATCACTATAAGAAAATCTCCTTGTGGTGAAGGTTCAGAGACATGGGATCGTTTCCA
GATGAGAATCCACAAGCTACCCACTGACTTGCACAGTCCTTCTGAGATTGTTAAGCAGTTGACTTCCATCAGTGTTGAGC
CAGGAATTGAGGTG

ORF - retro_ggor_2712 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.07 %
Parental protein coverage: 78.17 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalAFKDTGK-TPVEPEVAIHRIRITLTSRNVKSLE-KVCADLI-RGAKEKNLKVKGPVRMPTKTLRITTRKT
AFKDT.K.TPV..EV.IH.IRI.L.SR.VKSLE.KVCADLI.RG.KEKN.KVKGPV.MP.KTLRIT.RK.
RetrocopyAFKDTKK<TPVKLEVTIHQIRIPLMSRSVKSLE>KVCADLI>RGGKEKNVKVKGPV*MPAKTLRITIRKS
ParentalPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEL
PCGEGS.TWDRFQMRIHK...DLHSPSEIVKQ.TSIS.EPG.E.
RetrocopyPCGEGSETWDRFQMRIHKLPTDLHSPSEIVKQLTSISVEPGIEV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .19 RPM 119 .60 RPM
SRP007412_cerebellum 0 .83 RPM 94 .71 RPM
SRP007412_heart 0 .06 RPM 115 .48 RPM
SRP007412_kidney 0 .20 RPM 290 .35 RPM
SRP007412_liver 0 .00 RPM 248 .61 RPM
SRP007412_testis 0 .10 RPM 222 .22 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2712 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2712 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_4045
Pan troglodytes retro_ptro_2739
Pongo abelii retro_pabe_3317

Parental genes homology:
Parental genes homology involve 24 parental genes, and 322 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000001914711 retrocopies
Canis familiaris ENSCAFG0000002988420 retrocopies
Callithrix jacchus ENSCJAG000000166314 retrocopies
Cavia porcellus ENSCPOG0000001169710 retrocopies
Dipodomys ordii ENSDORG000000057942 retrocopies
Echinops telfairi ENSETEG000000033943 retrocopies
Felis catus ENSFCAG0000002923322 retrocopies
Homo sapiens ENSG0000000898826 retrocopies
Gorilla gorilla ENSGGOG00000001837 21 retrocopies
Loxodonta africana ENSLAFG000000025158 retrocopies
Macropus eugenii ENSMEUG0000001417121 retrocopies
Monodelphis domestica ENSMODG000000091146 retrocopies
Mustela putorius furoENSMPUG0000001045215 retrocopies
Mus musculus ENSMUSG000000282347 retrocopies
Nomascus leucogenys ENSNLEG0000000121419 retrocopies
Oryctolagus cuniculus ENSOCUG0000000306817 retrocopies
Otolemur garnettii ENSOGAG0000000776010 retrocopies
Ochotona princeps ENSOPRG0000001104211 retrocopies
Procavia capensis ENSPCAG000000043003 retrocopies
Pongo abelii ENSPPYG0000001860030 retrocopies
Pan troglodytes ENSPTRG0000002026427 retrocopies
Rattus norvegicus ENSRNOG000000085557 retrocopies
Sarcophilus harrisii ENSSHAG0000001120010 retrocopies
Sus scrofa ENSSSCG0000000624912 retrocopies



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