Parental gene:

RPS20, ENSCAFG00000029884

Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]
Organism:Dog (Canis familiaris)
Coordinates:29:7484295..7489691(-)


>ENSCAFG00000029884
ATGGCGTTTAAAGACACTGGGAAGACGCCCGTAGAACCAGAGGTGGCGATTCACCGAATTAGAATTACTCTAACCAGCCG
CAACGTAAAATCCTTGGAAAAGGTGTGTGCTGACTTGATCAGAGGTGCAAAGGAAAAGAATCTCAAAGTGAAAGGACCAG
TGCGGATGCCTACCAAGACTCTGAGAATCACTACGAGAAAGACTCCTTGTGGTGAAGGTTCTAAGACTTGGGATCGTTTT
CAGATGAGGATCCACAAGCGACTCATTGATCTGCACAGTCCTTCTGAGATTGTTAAGCAGATTACCTCCATCAGTATTGA
GCCTGGAGTCGAGGTTGAAGTCACCATCGCAGATGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 46 .05 RPM
SRP017611_kidney 393 .45 RPM
SRP017611_liver 93 .03 RPM
SRP012049_cerebellum 209 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019147 ortholog_one2one 11 retrogenes
Callithrix jacchus ENSCJAG00000016631 ortholog_one2one 4 retrogenes
Cavia porcellus ENSCPOG00000011697 possible_ortholog 10 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Echinops telfairi ENSETEG00000003394 possible_ortholog 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2one 21 retrogenes
Loxodonta africana ENSLAFG00000002515 possible_ortholog 8 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2many 21 retrogenes
Monodelphis domestica ENSMODG00000009114 ortholog_one2many 6 retrogenes
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Mus musculus ENSMUSG00000028234 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Oryctolagus cuniculus ENSOCUG00000003068 ortholog_one2one 17 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2one 10 retrogenes
Ochotona princeps ENSOPRG00000011042 ortholog_one2one 11 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Rattus norvegicus ENSRNOG00000008555 ortholog_one2many 7 retrogenes
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2many 10 retrogenes
Sus scrofa ENSSSCG00000006249 ortholog_one2one 12 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_559 54.62 97.48
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cfam_666 94.96 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cfam_672 77.55 82.35
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cfam_949 77.91 70.59
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_cfam_1144 80.91 89.92
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_cfam_1247 83.47 100.00
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_cfam_1287 85.47 97.48
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_cfam_1367 64.86 61.34
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_cfam_1409 91.53 99.16
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_cfam_1472 82.47 81.51
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_cfam_1633 66.67 72.27
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_cfam_1646 69.79 78.99
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_cfam_1688 75.22 94.12
Please wait, loading
Please wait, loading
Please wait, loading
14. retro_cfam_1719 70.65 76.47
Please wait, loading
Please wait, loading
Please wait, loading
15. retro_cfam_1810 73.95 98.32
Please wait, loading
Please wait, loading
Please wait, loading
16. retro_cfam_1964 86.67 100.00
Please wait, loading
Please wait, loading
Please wait, loading
17. retro_cfam_1978 89.17 100.00
Please wait, loading
Please wait, loading
Please wait, loading
18. retro_cfam_1992 76.04 80.67
Please wait, loading
Please wait, loading
Please wait, loading
19. retro_cfam_2008 61.98 100.00
Please wait, loading
Please wait, loading
Please wait, loading
20. retro_cfam_2193 72.86 57.98
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSCAFG00000029884 retrocopies