Parental gene:

RPL29, ENSCPOG00000011738

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_8:26977560..26979903(-)


>ENSCPOG00000011738
CCCGTGACCCATATTTCTGATGTTCACTTTTACCTTGTAGGTGCAGATATGGCCAAGTCCAAGAACCACACCACGCACAA
CCAGTCTCGGAAATGGCACAGAAATGGCATCAAGAAACCTCGATCGCAAAGATACGAATCTCTGAAGGGGGTAGATCCCA
AGTTCCTGAGGAATATGCGTTTTGCCAAGAAGCACAACAAGAAGGGCTTCAAGAAGATGCAGGCAAACAATGCCAAGGCC
ATGAGTGCACGCGCTGAGGCAATAAAGGCCCTCCTCAAGCCCAAGGAGGTCAAGCCCAAGTACCAGAAGGGTGCGAATCG
CAAGCTCACTCGACTTGCTCTTATCGCTCACCCCAAGCTTGGGAAGCGTATTCGTGCTTACATGGCCAAGGGTCGCAGGC
TTTGCCGACCAAAGGAGGTCCAGGCGCAGGTTGCTGCTCCAACTTCTGTTCCAGCTCAGGCTCCCAAAGGTGCCCAGGCC
CCTGTGAAGGCTCCACAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 116 .96 RPM
SRP017611_kidney 213 .14 RPM
SRP017611_brain 102 .15 RPM
SRP040447_lung 232 .08 RPM
SRP040447_skeletal_muscle 211 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009163 possible_ortholog 6 retrogenes
retro_amel_1373, retro_amel_1740, retro_amel_345, retro_amel_379, retro_amel_686, retro_amel_913,
Callithrix jacchus ENSCJAG00000005951 possible_ortholog 9 retrogenes
retro_cjac_135, retro_cjac_160, retro_cjac_241, retro_cjac_29, retro_cjac_331, retro_cjac_348, retro_cjac_358, retro_cjac_73, retro_cjac_96,
Felis catus ENSFCAG00000001762 possible_ortholog 9 retrogenes
retro_fcat_1032, retro_fcat_1132, retro_fcat_1753, retro_fcat_1774, retro_fcat_1897, retro_fcat_249, retro_fcat_485, retro_fcat_687, retro_fcat_952,
Gorilla gorilla ENSGGOG00000024691 possible_ortholog 16 retrogenes
retro_ggor_1007, retro_ggor_1090, retro_ggor_1205, retro_ggor_1315, retro_ggor_1330, retro_ggor_142, retro_ggor_1480, retro_ggor_1929, retro_ggor_224, retro_ggor_2247, retro_ggor_254, retro_ggor_2684, retro_ggor_312, retro_ggor_715, retro_ggor_863, retro_ggor_892,
Microcebus murinus ENSMICG00000002705 possible_ortholog 9 retrogenes
retro_mmur_192, retro_mmur_198, retro_mmur_303, retro_mmur_446, retro_mmur_508, retro_mmur_519, retro_mmur_657, retro_mmur_816, retro_mmur_938,
Myotis lucifugus ENSMLUG00000015088 possible_ortholog 14 retrogenes
retro_mluc_1086, retro_mluc_1160, retro_mluc_134, retro_mluc_1377, retro_mluc_1699, retro_mluc_1955, retro_mluc_2228, retro_mluc_2522, retro_mluc_2523, retro_mluc_2575, retro_mluc_297, retro_mluc_421, retro_mluc_889, retro_mluc_915,
Macaca mulatta ENSMMUG00000019248 possible_ortholog 2 retrogenes
retro_mmul_1352, retro_mmul_218,
Monodelphis domestica ENSMODG00000028750 ortholog_one2many 17 retrogenes
retro_mdom_1013, retro_mdom_1187, retro_mdom_1201, retro_mdom_1328, retro_mdom_1445, retro_mdom_1452, retro_mdom_1505, retro_mdom_1532, retro_mdom_1604, retro_mdom_1665, retro_mdom_1904, retro_mdom_35, retro_mdom_504, retro_mdom_589, retro_mdom_612, retro_mdom_639, retro_mdom_995,
Mustela putorius furo ENSMPUG00000011734 possible_ortholog 6 retrogenes
retro_mputfur_137, retro_mputfur_187, retro_mputfur_370, retro_mputfur_467, retro_mputfur_816, retro_mputfur_970,
Mus musculus ENSMUSG00000048758 ortholog_one2many 3 retrogenes
retro_mmus_203, retro_mmus_231, retro_mmus_86,
Otolemur garnettii ENSOGAG00000013766 possible_ortholog 2 retrogenes
retro_ogar_290, retro_ogar_31,
Pongo abelii ENSPPYG00000013818 possible_ortholog 21 retrogenes
retro_pabe_1062, retro_pabe_1162, retro_pabe_1306, retro_pabe_1503, retro_pabe_1714, retro_pabe_1882, retro_pabe_2125, retro_pabe_2131, retro_pabe_2398, retro_pabe_2718, retro_pabe_2952, retro_pabe_3254, retro_pabe_3284, retro_pabe_3504, retro_pabe_3525, retro_pabe_404, retro_pabe_459, retro_pabe_491, retro_pabe_673, retro_pabe_687, retro_pabe_911,
Rattus norvegicus ENSRNOG00000011138 ortholog_one2many 15 retrogenes
retro_rnor_1045, retro_rnor_1158, retro_rnor_1161, retro_rnor_1422, retro_rnor_1702, retro_rnor_184, retro_rnor_1951, retro_rnor_2207, retro_rnor_2222, retro_rnor_2356, retro_rnor_2561, retro_rnor_338, retro_rnor_397, retro_rnor_63, retro_rnor_928,
Sorex araneus ENSSARG00000013572 ortholog_one2many 8 retrogenes
retro_sara_108, retro_sara_309, retro_sara_329, retro_sara_347, retro_sara_400, retro_sara_53, retro_sara_637, retro_sara_669,
Sarcophilus harrisii ENSSHAG00000006854 ortholog_one2one 2 retrogenes
retro_shar_355, retro_shar_444,
Ictidomys tridecemlineatus ENSSTOG00000020488 ortholog_one2many 14 retrogenes
retro_itri_1345, retro_itri_1433, retro_itri_1482, retro_itri_1586, retro_itri_1664, retro_itri_1667, retro_itri_194, retro_itri_482, retro_itri_520, retro_itri_592, retro_itri_622, retro_itri_874, retro_itri_934, retro_itri_942,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1509 55.17 51.20
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Download FASTA sequences of all ENSCPOG00000011738 retrocopies