Parental gene:

RPL6, ENSG00000089009

Aliases:RPL6, L6, SHUJUN-2, TAXREB107, TXREB1
Description:ribosomal protein L6 [Source:HGNC Symbol;Acc:10362]
Organism:Human (Homo sapiens)
Coordinates:12:112842993..112856642(-)


>ENSG00000089009
ATGGCGGGTGAAAAAGTTGAGAAGCCAGATACTAAAGAGAAGAAACCCGAAGCCAAGAAGGTTGATGCTGGTGGCAAGGT
GAAAAAGGGTAACCTCAAAGCTAAAAAGCCCAAGAAGGGGAAGCCCCATTGCAGCCGCAACCCTGTCCTTGTCAGAGGAA
TTGGCAGGTATTCCCGATCTGCCATGTATTCCAGAAAGGCCATGTACAAGAGGAAGTACTCAGCCGCTAAATCCAAGGTT
GAAAAGAAAAAGAAGGAGAAGGTTCTCGCAACTGTTACAAAACCAGTTGGTGGTGACAAGAACGGCGGTACCCGGGTGGT
TAAACTTCGCAAAATGCCTAGATATTATCCTACTGAAGATGTGCCTCGAAAGCTGTTGAGCCACGGCAAAAAACCCTTCA
GTCAGCACGTGAGAAAACTGCGAGCCAGCATTACCCCCGGGACCATTCTGATCATCCTCACTGGACGCCACAGGGGCAAG
AGGGTGGTTTTCCTGAAGCAGCTGGCTAGTGGCTTATTACTTGTGACTGGACCTCTGGTCCTCAATCGAGTTCCTCTACG
AAGAACACACCAGAAATTTGTCATTGCCACTTCAACCAAAATCGATATCAGCAATGTAAAAATCCCAAAACATCTTACTG
ATGCTTACTTCAAGAAGAAGAAGCTGCGGAAGCCCAGACACCAGGAAGGTGAGATCTTCGACACAGAAAAAGAGAAATAT
GAGATTACGGAGCAGCGCAAGATTGATCAGAAAGCTGTGGACTCACAAATTTTACCAAAAATCAAAGCTATTCCTCAGCT
CCAGGGCTACCTGCGATCTGTGTTTGCTCTGACGAATGGAATTTATCCTCACAAATTGGTGTTCTAA

Library Parental gene expression (RPM)
bodymap2_liver 285 .99 RPM
bodymap2_lung 494 .64 RPM
bodymap2_breast 440 .47 RPM
bodymap2_adipose 476 .10 RPM
bodymap2_adrenal 699 .56 RPM
bodymap2_skeletal_muscle 237 .75 RPM
bodymap2_thyroid 557 .99 RPM
bodymap2_prostate 824 .70 RPM
bodymap2_colon 761 .83 RPM
bodymap2_testis 394 .46 RPM
bodymap2_brain 206 .53 RPM
bodymap2_heart 153 .63 RPM
bodymap2_white_blood_cells 915 .35 RPM
bodymap2_lymph_node 800 .90 RPM
bodymap2_ovary 879 .55 RPM
bodymap2_kidney 364 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003060 ortholog_one2many 1 retrogene
retro_acar_171,
Bos taurus ENSBTAG00000031723 possible_ortholog 6 retrogenes
retro_btau_1038, retro_btau_1117, retro_btau_1305, retro_btau_16, retro_btau_424, retro_btau_809,
Canis familiaris ENSCAFG00000008873 possible_ortholog 1 retrogene
retro_cfam_36,
Callithrix jacchus ENSCJAG00000012450 ortholog_one2many 7 retrogenes
retro_cjac_1362, retro_cjac_1620, retro_cjac_1949, retro_cjac_2723, retro_cjac_328, retro_cjac_349, retro_cjac_497,
Cavia porcellus ENSCPOG00000013526 ortholog_one2one 8 retrogenes
retro_cpor_1105, retro_cpor_1149, retro_cpor_1486, retro_cpor_382, retro_cpor_412, retro_cpor_651, retro_cpor_731, retro_cpor_982,
Dipodomys ordii ENSDORG00000005793 ortholog_one2one 1 retrogene
retro_dord_166,
Equus caballus ENSECAG00000017514 possible_ortholog 1 retrogene
retro_ecab_811,
Erinaceus europaeus ENSEEUG00000000281 ortholog_one2one 3 retrogenes
retro_eeur_503, retro_eeur_553, retro_eeur_595,
Felis catus ENSFCAG00000006858 possible_ortholog 12 retrogenes
retro_fcat_1264, retro_fcat_1370, retro_fcat_1844, retro_fcat_232, retro_fcat_398, retro_fcat_500, retro_fcat_625, retro_fcat_637, retro_fcat_643, retro_fcat_690, retro_fcat_926, retro_fcat_935,
Gorilla gorilla ENSGGOG00000003372 ortholog_one2one 16 retrogenes
retro_ggor_1602, retro_ggor_1893, retro_ggor_1898, retro_ggor_2047, retro_ggor_2138, retro_ggor_236, retro_ggor_2569, retro_ggor_2597, retro_ggor_2709, retro_ggor_2745, retro_ggor_290, retro_ggor_2938, retro_ggor_356, retro_ggor_426, retro_ggor_566, retro_ggor_816,
Macaca mulatta ENSMMUG00000007433 ortholog_one2many 1 retrogene
retro_mmul_171,
Monodelphis domestica ENSMODG00000003096 ortholog_one2one 4 retrogenes
retro_mdom_1556, retro_mdom_1624, retro_mdom_1784, retro_mdom_615,
Mustela putorius furo ENSMPUG00000002526 possible_ortholog 9 retrogenes
retro_mputfur_1116, retro_mputfur_1279, retro_mputfur_1320, retro_mputfur_1367, retro_mputfur_1407, retro_mputfur_1445, retro_mputfur_1489, retro_mputfur_401, retro_mputfur_571,
Mus musculus ENSMUSG00000029614 possible_ortholog 13 retrogenes
retro_mmus_1264, retro_mmus_1336, retro_mmus_1898, retro_mmus_2684, retro_mmus_276, retro_mmus_3065, retro_mmus_3579, retro_mmus_3611, retro_mmus_3622, retro_mmus_3719, retro_mmus_445, retro_mmus_465, retro_mmus_730,
Nomascus leucogenys ENSNLEG00000027093 possible_ortholog 2 retrogenes
retro_nleu_1813, retro_nleu_43,
Oryctolagus cuniculus ENSOCUG00000003802 possible_ortholog 5 retrogenes
retro_ocun_129, retro_ocun_17, retro_ocun_189, retro_ocun_229, retro_ocun_245,
Pongo abelii ENSPPYG00000025855 ortholog_one2one 13 retrogenes
retro_pabe_1764, retro_pabe_1891, retro_pabe_2451, retro_pabe_2493, retro_pabe_2573, retro_pabe_2897, retro_pabe_3314, retro_pabe_358, retro_pabe_3677, retro_pabe_3725, retro_pabe_43, retro_pabe_472, retro_pabe_868,
Rattus norvegicus ENSRNOG00000025936 possible_ortholog 1 retrogene
retro_rnor_129,
Sarcophilus harrisii ENSSHAG00000007096 ortholog_one2many 2 retrogenes
retro_shar_506, retro_shar_536,
Ictidomys tridecemlineatus ENSSTOG00000009409 possible_ortholog 3 retrogenes
retro_itri_1024, retro_itri_1125, retro_itri_684,
Tarsius syrichta ENSTSYG00000009492 ortholog_one2one 22 retrogenes
retro_tsyr_1046, retro_tsyr_1254, retro_tsyr_1600, retro_tsyr_1615, retro_tsyr_2052, retro_tsyr_2080, retro_tsyr_2123, retro_tsyr_2126, retro_tsyr_291, retro_tsyr_362, retro_tsyr_364, retro_tsyr_438, retro_tsyr_477, retro_tsyr_490, retro_tsyr_566, retro_tsyr_586, retro_tsyr_626, retro_tsyr_637, retro_tsyr_774, retro_tsyr_833, retro_tsyr_894, retro_tsyr_923,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_146 92.07 78.82
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2. retro_hsap_227 82.27 76.39
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3. retro_hsap_333 87.78 76.04
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4. retro_hsap_440 81.50 60.07
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5. retro_hsap_648 82.47 53.12
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6. retro_hsap_1035 86.39 100.00
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7. retro_hsap_1905 98.96 100.00
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8. retro_hsap_2074 86.67 62.50
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9. retro_hsap_2164 54.42 51.04
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10. retro_hsap_2206 66.18 70.83
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11. retro_hsap_2566 75.14 61.11
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12. retro_hsap_2720 74.01 77.43
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13. retro_hsap_2725 68.25 72.57
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14. retro_hsap_2939 96.19 100.00
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15. retro_hsap_2955 81.86 69.79
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16. retro_hsap_3009 79.84 82.29
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17. retro_hsap_3014 58.08 55.90
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18. retro_hsap_3070 61.71 93.06
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19. retro_hsap_3431 62.80 100.00
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20. retro_hsap_3559 64.07 57.29
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21. retro_hsap_3795 97.22 100.00
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22. retro_hsap_3818 76.53 67.01
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23. retro_hsap_3856 92.71 100.00
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24. retro_hsap_4039 83.75 95.49
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25. retro_hsap_4729 79.93 100.00
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26. retro_hsap_4788 85.31 73.26
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Download FASTA sequences of all ENSG00000089009 retrocopies