RetrogeneDB ID: | retro_tsyr_1615 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_5126:24112..24970(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSTSYG00000009492 | ||
Aliases: | None | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 76.82 % |
Parental protein coverage: | 99.65 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAGEKVEKPNAKEKKPETK-KADAGGKVKKGKLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALY |
MAGEKVEKP..K.K.PE...KADAGGKVKKG..K.KK.KKGK.H.SRN.VLVRGIG.YS.SA.YSRKALY | |
Retrocopy | MAGEKVEKPDTKKKRPEAR<KADAGGKVKKGNIKNKKLKKGKCHYSRNSVLVRGIGKYSQSALYSRKALY |
Parental | KRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHIRK |
..KYSAAKSKVEKKKKEK.LAT..KP.G.D.NGG..VVKLRKM.R.YPTEDVPRKL.S.GK.PFSQHIR. | |
Retrocopy | MGKYSAAKSKVEKKKKEKLLATIKKPAGVDNNGGKYVVKLRKMHR*YPTEDVPRKL*SQGKSPFSQHIRS |
Parental | LRASIT-PGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKV |
L.ASIT.P.T.LII..G..RGKRVVFLKQLGSGLLLVTGPLVL.RVPL.R.HQ..VI.TS.KIDISNVK. | |
Retrocopy | LQASIT>PETTLIIIIGYQRGKRVVFLKQLGSGLLLVTGPLVLSRVPL-RAHQNLVISTSIKIDISNVKI |
Parental | PKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALT |
P..LT.AY.KK.QL.KP.HQE.EIF.TEKEKYEITEQ.KIDQKA.DSQ.LPKIKAIPQ.QGYL.SVF.L. | |
Retrocopy | PTYLTGAYVKKQQLWKPKHQEDEIFNTEKEKYEITEQHKIDQKAMDSQVLPKIKAIPQFQGYL*SVFPLM |
Parental | NGVYPHKLV |
NGVY..KLV | |
Retrocopy | NGVYSDKLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |