RetrogeneDB ID: | retro_hsap_2939 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:66439176..66440043(+) | ||
Located in intron of: | ENSG00000145242 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000243199 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSG00000089009 | ||
Aliases: | RPL6, L6, SHUJUN-2, TAXREB107, TXREB1 | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 96.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYK |
MAGEKV.KPDTKEKKPEAKK.DAGGKVKKGNLKAKKPKKGKP.CSRNPVLVRGIGRYSRSAMYSRKAMYK | |
Retrocopy | MAGEKV*KPDTKEKKPEAKKTDAGGKVKKGNLKAKKPKKGKPRCSRNPVLVRGIGRYSRSAMYSRKAMYK |
Parental | RKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKK-PFSQHVRK |
RKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHG...PFSQHVRK | |
Retrocopy | RKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGXXXPFSQHVRK |
Parental | LRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIP |
LRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPL.RTHQKFVIATSTKIDISNVKIP | |
Retrocopy | LRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPL*RTHQKFVIATSTKIDISNVKIP |
Parental | KHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTN |
KHLTDAYFKKK.LRKPRHQEGEIFDTEK.KYEITEQRKIDQKAVDSQIL.KIKAIPQLQG.LRSVFALTN | |
Retrocopy | KHLTDAYFKKKQLRKPRHQEGEIFDTEKGKYEITEQRKIDQKAVDSQILSKIKAIPQLQG*LRSVFALTN |
Parental | GIYPHKLVF |
GIYPHKLVF | |
Retrocopy | GIYPHKLVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 1 .95 RPM | 476 .10 RPM |
bodymap2_adrenal | 3 .44 RPM | 699 .56 RPM |
bodymap2_brain | 0 .09 RPM | 206 .53 RPM |
bodymap2_breast | 1 .48 RPM | 440 .47 RPM |
bodymap2_colon | 1 .33 RPM | 761 .83 RPM |
bodymap2_heart | 0 .35 RPM | 153 .63 RPM |
bodymap2_kidney | 1 .26 RPM | 364 .93 RPM |
bodymap2_liver | 0 .19 RPM | 285 .99 RPM |
bodymap2_lung | 1 .53 RPM | 494 .64 RPM |
bodymap2_lymph_node | 1 .41 RPM | 800 .90 RPM |
bodymap2_ovary | 2 .62 RPM | 879 .55 RPM |
bodymap2_prostate | 1 .80 RPM | 824 .70 RPM |
bodymap2_skeletal_muscle | 0 .53 RPM | 237 .75 RPM |
bodymap2_testis | 1 .00 RPM | 394 .46 RPM |
bodymap2_thyroid | 1 .21 RPM | 557 .99 RPM |
bodymap2_white_blood_cells | 2 .09 RPM | 915 .35 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 4 .02 RPM |
CEU_NA11843 | 3 .16 RPM |
CEU_NA11930 | 6 .94 RPM |
CEU_NA12004 | 1 .48 RPM |
CEU_NA12400 | 5 .23 RPM |
CEU_NA12751 | 4 .64 RPM |
CEU_NA12760 | 6 .56 RPM |
CEU_NA12827 | 5 .94 RPM |
CEU_NA12872 | 3 .51 RPM |
CEU_NA12873 | 4 .85 RPM |
FIN_HG00183 | 6 .18 RPM |
FIN_HG00277 | 3 .55 RPM |
FIN_HG00315 | 5 .38 RPM |
FIN_HG00321 | 3 .90 RPM |
FIN_HG00328 | 2 .60 RPM |
FIN_HG00338 | 4 .22 RPM |
FIN_HG00349 | 4 .13 RPM |
FIN_HG00375 | 2 .18 RPM |
FIN_HG00377 | 3 .45 RPM |
FIN_HG00378 | 4 .78 RPM |
GBR_HG00099 | 3 .23 RPM |
GBR_HG00111 | 3 .83 RPM |
GBR_HG00114 | 2 .47 RPM |
GBR_HG00119 | 4 .12 RPM |
GBR_HG00131 | 4 .31 RPM |
GBR_HG00133 | 4 .51 RPM |
GBR_HG00134 | 1 .38 RPM |
GBR_HG00137 | 1 .87 RPM |
GBR_HG00142 | 1 .44 RPM |
GBR_HG00143 | 4 .91 RPM |
TSI_NA20512 | 3 .11 RPM |
TSI_NA20513 | 2 .30 RPM |
TSI_NA20518 | 2 .66 RPM |
TSI_NA20532 | 5 .27 RPM |
TSI_NA20538 | 3 .78 RPM |
TSI_NA20756 | 6 .26 RPM |
TSI_NA20765 | 3 .58 RPM |
TSI_NA20771 | 6 .50 RPM |
TSI_NA20786 | 2 .35 RPM |
TSI_NA20798 | 2 .68 RPM |
YRI_NA18870 | 2 .67 RPM |
YRI_NA18907 | 1 .94 RPM |
YRI_NA18916 | 6 .21 RPM |
YRI_NA19093 | 3 .64 RPM |
YRI_NA19099 | 3 .59 RPM |
YRI_NA19114 | 4 .33 RPM |
YRI_NA19118 | 4 .18 RPM |
YRI_NA19213 | 2 .92 RPM |
YRI_NA19214 | 0 .89 RPM |
YRI_NA19223 | 2 .90 RPM |