RetrogeneDB ID: | retro_hsap_3009 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:170087427..170088131(+) | ||
Located in intron of: | ENSG00000154447 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000214671 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSG00000089009 | ||
Aliases: | RPL6, L6, SHUJUN-2, TAXREB107, TXREB1 | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 79.84 % |
Parental protein coverage: | 82.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | GEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK |
GEK.EK.DTKEK.PEA.K.DAGGKVK.GN.KAK.PKKGK.HC..NP.L.RGIGRYS.SA.YSR.AMYKRK | |
Retrocopy | GEKIEKLDTKEKEPEATKADAGGKVKTGNFKAKSPKKGKLHCGQNPILIRGIGRYSSSAIYSRSAMYKRK |
Parental | YSAAKSKVEKKKKEKVLATVTKPVGGDKNGG-TRVVKLRKMPRYYPTEDVPRKLLSHGK-KP-FSQHVR- |
YSA.KSKVE.KKKEKVLATVTKPVGG.KNGG.T.VVKL.KMPRYYPTEDV..KLLSH.K.KP.FSQHV.. | |
Retrocopy | YSANKSKVE-KKKEKVLATVTKPVGGEKNGG>T*VVKLHKMPRYYPTEDVSQKLLSHSK<KP<FSQHVT< |
Parental | KLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL-VTGPLVLNRVPL-RRTHQKFVIATSTKIDISNV |
KLRASITPGTILIIL...HRGKR.VF.KQLA.G.LL..TGPLVLN.VPL.RRTHQKFVIATSTKI.I.NV | |
Retrocopy | KLRASITPGTILIILSRCHRGKRMVFPKQLATGSLL<LTGPLVLN*VPL<RRTHQKFVIATSTKIGICNV |
Parental | KIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEK |
KI.KHLT.AYFKK..L.KPR.QEG.IFDTEKEK | |
Retrocopy | KISKHLTVAYFKKRQLQKPRYQEGDIFDTEKEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 476 .10 RPM |
bodymap2_adrenal | 0 .00 RPM | 699 .56 RPM |
bodymap2_brain | 0 .00 RPM | 206 .53 RPM |
bodymap2_breast | 0 .00 RPM | 440 .47 RPM |
bodymap2_colon | 0 .00 RPM | 761 .83 RPM |
bodymap2_heart | 0 .04 RPM | 153 .63 RPM |
bodymap2_kidney | 0 .00 RPM | 364 .93 RPM |
bodymap2_liver | 0 .00 RPM | 285 .99 RPM |
bodymap2_lung | 0 .00 RPM | 494 .64 RPM |
bodymap2_lymph_node | 0 .00 RPM | 800 .90 RPM |
bodymap2_ovary | 0 .00 RPM | 879 .55 RPM |
bodymap2_prostate | 0 .00 RPM | 824 .70 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 237 .75 RPM |
bodymap2_testis | 0 .00 RPM | 394 .46 RPM |
bodymap2_thyroid | 0 .00 RPM | 557 .99 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 915 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2493 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .04 RPM |