RetrogeneDB ID: | retro_tsyr_586 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_143861:3..813(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSTSYG00000009492 | ||
Aliases: | None | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 93.7 % |
Parental protein coverage: | 93.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KKADAGGKVKKGKLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKEKV |
KKADAGGKVKKGKLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKV.....EKV | |
Retrocopy | KKADAGGKVKKGKLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVXXXXXEKV |
Parental | LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHIRKLRASITPGTILIILTGRHR |
LATVTKPVGGDKNGGTRVVKL.KMPRYYPTEDVP.KLLSHGKKPFSQH.RKLRASITP.TILIILTGRHR | |
Retrocopy | LATVTKPVGGDKNGGTRVVKLCKMPRYYPTEDVP*KLLSHGKKPFSQHVRKLRASITPRTILIILTGRHR |
Parental | GKRVVFLKQLGSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKVPKHLTDAYFKKKQLRKPRHQ |
GKRVVFLKQLGSGLLLVTGPLVLNR.PLRRTHQKFVIATSTKIDI..VK.PKHLTDAYFKK.QLRKPRHQ | |
Retrocopy | GKRVVFLKQLGSGLLLVTGPLVLNRFPLRRTHQKFVIATSTKIDIRDVKIPKHLTDAYFKKQQLRKPRHQ |
Parental | EGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGVYPHKLVF |
E.EIFDTEKEKYEIT.Q.KIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGVYPHKLVF | |
Retrocopy | ESEIFDTEKEKYEITGQHKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGVYPHKLVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |