RetrogeneDB ID: | retro_eeur_503 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_329190:779..1308(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSEEUG00000000281 | ||
Aliases: | None | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 92.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLESGLLLVTGPLSLN |
PRYYPTEDVPRKLLSHGKKPFSQHV.KLRASI.PGTIL.ILTGRHRGK.VVFLKQLESGLLL.TGPLSLN | |
Retrocopy | PRYYPTEDVPRKLLSHGKKPFSQHVWKLRASISPGTILTILTGRHRGKKVVFLKQLESGLLLATGPLSLN |
Parental | RVPLRRTHQKFVIATSTKIDISSVKIPKHLTD-TYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQK |
RVPL.RTHQ.FVIATSTKIDISSVKIPKHLTD.TYFKKKKL.K.RHQEGEIFDTEKEKYE.TEQ.KVDQK | |
Retrocopy | RVPLHRTHQEFVIATSTKIDISSVKIPKHLTD>TYFKKKKLQKLRHQEGEIFDTEKEKYETTEQHKVDQK |
Parental | AVDSQILPRIKAVPQLQGYLRSVFALTNGIYPHKLVF |
AVDSQILPRIKAVPQLQGYL.SVFALTNGIYPHKL.F | |
Retrocopy | AVDSQILPRIKAVPQLQGYLLSVFALTNGIYPHKLMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 26 .91 RPM | 203 .04 RPM |
SRP017611_kidney | 58 .32 RPM | 458 .53 RPM |
SRP017611_liver | 47 .11 RPM | 321 .55 RPM |