RetrogeneDB ID: | retro_tsyr_1600 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_50601:258..1122(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSTSYG00000009492 | ||
Aliases: | None | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 94.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAGEKVEKPNAKEKKPETKKADAGGKVKKGKLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYK |
MAGEKVEKPNAKEKK.E.KKA.AG.KVKKGKLKAKKPKKGKPHCSRNPVLVRGIGRYS.SA.YSRKALYK | |
Retrocopy | MAGEKVEKPNAKEKKLEAKKAAAGDKVKKGKLKAKKPKKGKPHCSRNPVLVRGIGRYS*SAVYSRKALYK |
Parental | RKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHIRKL |
RKYSAAKSKV.....EKVLATVTKPVGGDK.GGT.VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQH.RKL | |
Retrocopy | RKYSAAKSKVXXXXXEKVLATVTKPVGGDKKGGTEVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKL |
Parental | RASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKVPK |
RASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKVPK | |
Retrocopy | RASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKVPK |
Parental | HLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNG |
HLTDAYFKK.QLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQG.LRSVFALTNG | |
Retrocopy | HLTDAYFKKQQLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGDLRSVFALTNG |
Parental | VYPHKLVF |
VY.HKLVF | |
Retrocopy | VYLHKLVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |