RetrogeneDB ID: | retro_tsyr_566 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_140364:1441..2187(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSTSYG00000009492 | ||
Aliases: | None | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 92.8 % |
Parental protein coverage: | 86.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GKPHCS-RNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVK |
G.PHCS..NPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEK.KKEKVLATVTKPVG.DKNGGTRVVK | |
Retrocopy | GEPHCS<LNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKNKKEKVLATVTKPVGSDKNGGTRVVK |
Parental | LRKMPRYYPTEDVPRKLLSHGKKPFSQHIRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGP |
L.KMPRYYPTEDVPRKLLSHGKKPFSQH.RKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTG. | |
Retrocopy | LHKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGS |
Parental | LVLNRVPLRRTHQKFVIATSTKIDISNVKVPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKI |
LVLN.V.LRRTHQKFV.ATSTKIDISNVK.PKHLTDAY.KK.QL.KPRHQEGEI.DTEKEKYEITEQRKI | |
Retrocopy | LVLNQVTLRRTHQKFVNATSTKIDISNVKIPKHLTDAYLKKQQLQKPRHQEGEISDTEKEKYEITEQRKI |
Parental | DQKAVDSQILPKIKAIPQLQGYLRSVFALTNGVYPHKLVF |
DQKAVDSQILPKIKAIPQLQGYLRSVFALTNGVYP.KL.F | |
Retrocopy | DQKAVDSQILPKIKAIPQLQGYLRSVFALTNGVYPYKLMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |