Parental gene:

Rps11, ENSMUSG00000003429

Aliases:None
Description:ribosomal protein S11 [Source:MGI Symbol;Acc:MGI:1351329]
Organism:Mouse (Mus musculus)
Coordinates:7:45122387..45124389(-)


>ENSMUSG00000003429
ATGGCGGACATTCAGACGGAGCGTGCTTACCAAAAGCAGCCTACGATCTTTCAAAACAAGAAGCGGGTTCTGCTGGGAGA
AACCGGCAAGGAAAAACTCCCTCGGTACTACAAGAATATCGGTCTAGGCTTCAAGACGCCTAAAGAGGCTATTGAGGGTA
CCTACATAGACAAGAAATGCCCCTTCACTGGTAACGTCTCCATCCGAGGTCGGATCCTGTCTGGTGTCGTGACGAAGATG
AAGATGCAGAGGACCATTGTCATCCGCCGGGACTATCTCCATTACATCCGAAAGTACAATCGCTTTGAGAAGCGTCACAA
GAACATGTCTGTGCACCTGTCCCCCTGTTTCAGGGATGTACAGATCGGAGACATTGTCACAGTTGGAGAGTGCAGGCCCC
TGAGCAAGACTGTGCGATTCAATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCAGTTTCAGAAGTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain 79 .81 RPM
SRP007412_cerebellum 69 .13 RPM
SRP007412_heart 118 .45 RPM
SRP007412_kidney 111 .74 RPM
SRP007412_liver 98 .26 RPM
SRP007412_testis 77 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003631 possible_ortholog 9 retrogenes
retro_cfam_126, retro_cfam_1333, retro_cfam_1572, retro_cfam_1656, retro_cfam_1669, retro_cfam_1900, retro_cfam_1955, retro_cfam_2121, retro_cfam_248,
Danio rerio ENSDARG00000053058 ortholog_one2many 1 retrogene
retro_drer_15,
Dipodomys ordii ENSDORG00000012195 ortholog_one2one 1 retrogene
retro_dord_635,
Equus caballus ENSECAG00000000370 ortholog_one2one 1 retrogene
retro_ecab_868,
Felis catus ENSFCAG00000009196 ortholog_one2one 13 retrogenes
retro_fcat_1362, retro_fcat_1491, retro_fcat_1535, retro_fcat_1564, retro_fcat_1719, retro_fcat_1945, retro_fcat_197, retro_fcat_1991, retro_fcat_273, retro_fcat_507, retro_fcat_792, retro_fcat_854, retro_fcat_995,
Microcebus murinus ENSMICG00000002542 ortholog_one2one 8 retrogenes
retro_mmur_1278, retro_mmur_1317, retro_mmur_186, retro_mmur_295, retro_mmur_430, retro_mmur_452, retro_mmur_812, retro_mmur_820,
Monodelphis domestica ENSMODG00000013434 ortholog_one2one 7 retrogenes
retro_mdom_1185, retro_mdom_1284, retro_mdom_1421, retro_mdom_1950, retro_mdom_636, retro_mdom_922, retro_mdom_978,
Otolemur garnettii ENSOGAG00000004627 possible_ortholog 7 retrogenes
retro_ogar_1290, retro_ogar_1813, retro_ogar_1910, retro_ogar_2037, retro_ogar_2573, retro_ogar_2640, retro_ogar_840,
Pan troglodytes ENSPTRG00000011299 possible_ortholog 1 retrogene
retro_ptro_88,
Rattus norvegicus ENSRNOG00000020595 possible_ortholog 18 retrogenes
retro_rnor_1132, retro_rnor_1159, retro_rnor_1261, retro_rnor_1299, retro_rnor_1363, retro_rnor_1414, retro_rnor_1435, retro_rnor_1451, retro_rnor_1635, retro_rnor_1790, retro_rnor_2000, retro_rnor_2647, retro_rnor_385, retro_rnor_394, retro_rnor_538, retro_rnor_737, retro_rnor_835, retro_rnor_989,
Ictidomys tridecemlineatus ENSSTOG00000023443 possible_ortholog 2 retrogenes
retro_itri_1033, retro_itri_805,
Tupaia belangeri ENSTBEG00000016677 possible_ortholog 16 retrogenes
retro_tbel_125, retro_tbel_1361, retro_tbel_1753, retro_tbel_2071, retro_tbel_2207, retro_tbel_2808, retro_tbel_2947, retro_tbel_319, retro_tbel_3401, retro_tbel_3571, retro_tbel_3600, retro_tbel_3742, retro_tbel_449, retro_tbel_604, retro_tbel_801, retro_tbel_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_398 53.33 56.96
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2. retro_mmus_404 85.62 100.00
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3. retro_mmus_714 85.27 81.65
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4. retro_mmus_754 91.30 86.71
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5. retro_mmus_842 94.79 60.76
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6. retro_mmus_860 93.04 100.00
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7. retro_mmus_1738 72.13 76.58
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8. retro_mmus_2230 62.79 80.38
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9. retro_mmus_2255 94.30 100.00
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10. retro_mmus_2322 91.15 71.52
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11. retro_mmus_2486 77.36 100.00
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12. retro_mmus_2854 52.50 75.32
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13. retro_mmus_3048 76.10 98.73
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14. retro_mmus_3051 82.99 92.41
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15. retro_mmus_3060 82.76 72.78
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16. retro_mmus_3342 89.94 100.00
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Download FASTA sequences of all ENSMUSG00000003429 retrocopies