RetrogeneDB ID: | retro_fcat_995 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:126985080..126985564(+) | ||
Located in intron of: | ENSFCAG00000018522 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000024200 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSFCAG00000009196 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 88.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRG |
M.DIQTERAYQKQPTIFQNKKR.LLGETGKEKL.RYYKN.GL.FKTPKEA.EGTYIDKKCPFTGNVSIRG | |
Retrocopy | MVDIQTERAYQKQPTIFQNKKRILLGETGKEKLSRYYKNSGLDFKTPKEAVEGTYIDKKCPFTGNVSIRG |
Parental | RILSGVVTKMKMQRTIVIRRDYLHYIRK---YNRFEKRHKNMSVHLSPCFRDVQIGDIVTVG-ECRPLSK |
.ILSGVVTKMKMQRTIV..RDYLHYIR....YNRFEKRHKNMSVHLSPC.RDVQIGDIVT.G.ECRPLSK | |
Retrocopy | QILSGVVTKMKMQRTIVTHRDYLHYIRTSIVYNRFEKRHKNMSVHLSPCLRDVQIGDIVTAG>ECRPLSK |
Parental | TVRFNVLKVTKAAGTKKQFQKF |
TV.FN.LKVTKAA.TKKQFQKF | |
Retrocopy | TVHFNMLKVTKAASTKKQFQKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 123 .04 RPM |
SRP017611_kidney | 0 .72 RPM | 501 .27 RPM |
SRP017611_liver | 0 .20 RPM | 210 .87 RPM |