RetrogeneDB ID: | retro_fcat_1991 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:61132621..61132925(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSFCAG00000009196 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 70.59 % |
Parental protein coverage: | 63.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVT |
.KC.F..NVS....IL.G.VT..KMQRTIVI..DYLHYI.K.N.FEK.HKNMSVHLSPCF..V.I..IVT | |
Retrocopy | QKCSFPHNVSTQRHILPGMVTRVKMQRTIVICQDYLHYIQKNNCFEKCHKNMSVHLSPCFKNVNIENIVT |
Parental | VGECRPLSKTVRFNVLKVTKAAGT-KKQFQKF |
VGEC.PL..TV.FN.LKVTKA.GT.KKQFQKF | |
Retrocopy | VGECQPLRETVSFNTLKVTKASGT>KKQFQKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 123 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 501 .27 RPM |
SRP017611_liver | 0 .00 RPM | 210 .87 RPM |