RetrogeneDB ID: | retro_fcat_1362 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:108308587..108308926(-) | ||
Located in intron of: | ENSFCAG00000012834 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSFCAG00000009196 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 73.91 % |
Parental protein coverage: | 72.78 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRG |
M.DIQ...AYQKQ.T.FQNK...LLGETGK.K...YYKN.GLGFKTPKEA.EGTYIDKKCPFTGN..I.G | |
Retrocopy | MVDIQMQCAYQKQSTTFQNKRKILLGETGK*KFLWYYKNMGLGFKTPKEATEGTYIDKKCPFTGN-AI*G |
Parental | RILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSP |
.ILS.VVTKMKMQR..VI..DYLHYI..Y..FEK.HKNMSV.LSP | |
Retrocopy | QILSDVVTKMKMQRATVIP*DYLHYI*QYSCFEK-HKNMSVYLSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 123 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 501 .27 RPM |
SRP017611_liver | 0 .00 RPM | 210 .87 RPM |