RetrogeneDB ID: | retro_fcat_1719 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:51391127..51391538(-) | ||
Located in intron of: | ENSFCAG00000026835 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSFCAG00000009196 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 69.34 % |
Parental protein coverage: | 86.71 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | RVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRD |
RVL.GET.KEK...YYKNIG.GF..PKEAIE.T...KKCPFT..VSIRG.ILSG.VTK.KM.RTIVI... | |
Retrocopy | RVLFGETSKEKFL*YYKNIGWGFQMPKEAIECTCTGKKCPFTPKVSIRGQILSGLVTKIKMKRTIVIH*A |
Parental | YLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF |
Y.HY..KYN.FEKRH...SV.LSPCF.DV..G..VTVGE..PLSK.V.F..LKVTKAAGT.KQFQ.F | |
Retrocopy | YFHYLQKYNCFEKRHQSLSVYLSPCFGDV*TGNNVTVGEG*PLSKSVCFPELKVTKAAGTEKQFQTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 123 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 501 .27 RPM |
SRP017611_liver | 0 .00 RPM | 210 .87 RPM |